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Muhammad Asif
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Identifying disease genes using machine learning and gene functional similarities, assessed through Gene Ontology
M Asif, HF Martiniano, AM Vicente, FM Couto
PloS one 13 (12), e0208626, 2018
852018
Machine learning for synergistic network pharmacology: a comprehensive overview
F Noor, M Asif, UA Ashfaq, M Qasim, M Tahir ul Qamar
Briefings in Bioinformatics, bbad120, 2023
272023
Identification of biological mechanisms underlying a multidimensional ASD phenotype using machine learning
M Asif, HFMC Martiniano, AR Marques, JX Santos, J Vilela, C Rasga, ...
Translational psychiatry 10 (1), 1-12, 2020
252020
A Role for Gene-Environment Interactions in Autism Spectrum Disorder Is Supported by Variants in Genes Regulating the Effects of Exposure to Xenobiotics
JX Santos, C Rasga, AR Marques, H Martiniano, M Asif, J Vilela, ...
Frontiers in Neuroscience 16, 2022
172022
Comparative molecular docking analysis of cytoplasmic dynein light chain DYNLL1 with pilin to explore the molecular mechanism of pathogenesis caused by Pseudomonas aeruginosa PAO
S Kausar, M Asif, N Bibi, S Rashid
PloS one 8 (10), e76730, 2013
162013
Biomedical knowledge graph embeddings for personalized medicine: Predicting disease-gene associations
H Vilela, J. Asif, M. Marques, AR. Santos, JX. Rasga, C. Vicente, A. Martiniano
Expert Systems, 2022
9*2022
Light-emitting diodes effect on Aspergillus species in filtered surface water: DNA damage, proteome response and potential reactivation
BR Oliveira, AP Marques, M Asif, MTB Crespo, VJ Pereira
Environmental Pollution 287, 117553, 2021
52021
Comprehensive computational analysis reveals YXXΦ [I/L/M/F/V] motif and YXXΦ-like tetrapeptides across HFRS causing Hantaviruses and their association with viral pathogenesis …
F Noor, U Ashfaq, M Asif, M Adeel, A Alshammari, M Alharbi
Frontiers in immunology 13, 2022
42022
Network propagation-based semi-supervised identification of genes associated with autism spectrum disorder
HFMC Martiniano, M Asif, AM Vicente, L Correia
International Meeting on Computational Intelligence Methods for …, 2020
42020
ShIVA, a user-friendly and interactive interface giving biologists control over their single-cell RNA-seq data.
R Aussel, M Asif, S Chenag, S Jaeger, P Milpied, L Spinelli
bioRxiv, 2022.09. 20.508636, 2022
32022
FunVar: A systematic pipeline to unravel the convergence patterns of genetic variants in ASD, a paradigmatic complex disease
M Asif, AM Vicente, FM Couto
Journal of biomedical informatics 98, 103273, 2019
32019
Interações gene-ambiente na perturbação do espetro do autismo
JX Santos, C Rasga, AR Marques, M Asif, AM Vicente
Instituto Nacional de Saúde Doutor Ricardo Jorge, IP 6 (Supl 9), 29-33, 2017
22017
DGH-GO: Dissecting the Genetic Heterogeneity of complex diseases using Gene Ontology
M Asif, H Martiniano, A Lamurias, S Kausar, F Couto
bioRxiv, 2022
12022
Biomedical Knowledge Graph Embeddings for Personalized Medicine
J Vilela, M Asif, AR Marques, JX Santos, C Rasga, A Vicente, ...
EPIA Conference on Artificial Intelligence, 584-595, 2021
12021
Exploratory analysis of mutations targeting noncoding RNAs in autism
AR Marques, H Martiniano, M Asif, JP Santos, A M Vicente
2º Dia do Jovem Investigador do Instituto Nacional de Saúde Doutor Ricardo …, 2017
12017
Increased frequency of the autism broader phenotype in mothers transmitting etiological CNVs to sons affected by Autism Spectrum Disorder (ASD)
M Asif, AM Vicente, FM Couto
1st BioSys/BioISI Summer Retreat, 23-24, Julho, 2016, 2016
12016
Identification of Neurotransmission and Synaptic Biological Processes Disrupted in Autism Spectrum Disorder Using Interaction Networks and Community Detection Analysis
J Vilela, H Martiniano, AR Marques, JX Santos, M Asif, C Rasga, ...
Biomedicines 11 (11), 2971, 2023
2023
scRNAseq_KNIME workflow: A Customizable, Locally Executable, Interactive and Automated KNIME workflow for single-cell RNA seq
S Kausar, M Asif, A Baudot
bioRxiv, 2023.01. 14.524084, 2023
2023
Establishing genotype-phenotype associations for ASD
ACG Ilheu, M Asif, FM Couto
EUROPEAN JOURNAL OF HUMAN GENETICS 27, 1422-1423, 2019
2019
An integrative approach to correlate clinical presentation patterns in Autism Spectrum Disorder with biological processes disrupted by Copy Number Variants (CNV) in brain genes
M Asif, H Martiniano, C Rasga, AR Marques, JX Santos, G Oliveira, ...
EUROPEAN JOURNAL OF HUMAN GENETICS 27, 569-569, 2019
2019
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