| Diversity and divergence of the glioma-infiltrating T-cell receptor repertoire JS Sims, B Grinshpun, Y Feng, TH Ung, JA Neira, JL Samanamud, ... Proceedings of the National Academy of Sciences 113 (25), E3529-E3537, 2016 | 109 | 2016 |
| Four‐body contact potentials derived from two protein datasets to discriminate native structures from decoys Y Feng, A Kloczkowski, RL Jernigan Proteins: Structure, Function, and Bioinformatics 68 (1), 57-66, 2007 | 93 | 2007 |
| The extent of cooperativity of protein motions observed with elastic network models is similar for atomic and coarser-grained models TZ Sen, Y Feng, JV Garcia, A Kloczkowski, RL Jernigan Journal of chemical theory and computation 2 (3), 696-704, 2006 | 87 | 2006 |
| A novel two-component signaling system facilitates uropathogenic Escherichia coli's ability to exploit abundant host metabolites W Cai, Y Wannemuehler, G Dell'Anna, B Nicholson, NL Barbieri, ... PLoS pathogens 9 (6), e1003428, 2013 | 78 | 2013 |
| Cell-to-cell movement of mitochondria in plants C Gurdon, Z Svab, Y Feng, D Kumar, P Maliga Proceedings of the National Academy of Sciences 113 (12), 3395-3400, 2016 | 66 | 2016 |
| Transcriptome analysis of avian pathogenic Escherichia coli O1 in chicken serum reveals adaptive responses to systemic infection G Li, KA Tivendale, P Liu, Y Feng, Y Wannemuehler, W Cai, ... Infection and immunity 79 (5), 1951-1960, 2011 | 57 | 2011 |
| Transcriptome and metabolome reveal distinct carbon allocation patterns during internode sugar accumulation in different sorghum genotypes Y Li, W Wang, Y Feng, M Tu, PE Wittich, NJ Bate, J Messing Plant biotechnology journal 17 (2), 472-487, 2019 | 55 | 2019 |
| Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads J Dong, Y Feng, D Kumar, W Zhang, T Zhu, MC Luo, J Messing Proceedings of the National Academy of Sciences 113 (29), 7949-7956, 2016 | 44 | 2016 |
| Characterizing immunoglobulin repertoire from whole blood by a personal genome sequencer F Gao, E Lin, Y Feng, WJ Mack, Y Shen, K Wang PloS one 8 (9), e75294, 2013 | 44 | 2013 |
| AatA is a novel autotransporter and virulence factor of avian pathogenic Escherichia coli G Li, Y Feng, S Kariyawasam, KA Tivendale, Y Wannemuehler, F Zhou, ... Infection and immunity 78 (3), 898-906, 2010 | 44 | 2010 |
| The energy profiles of atomic conformational transition intermediates of adenylate kinase Y Feng, L Yang, A Kloczkowski, RL Jernigan Proteins: Structure, Function, and Bioinformatics 77 (3), 551-558, 2009 | 42 | 2009 |
| Potentials' R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials Y Feng, A Kloczkowski, RL Jernigan BMC bioinformatics 11 (1), 92, 2010 | 41 | 2010 |
| Free energies for coarse-grained proteins by integrating multibody statistical contact potentials with entropies from elastic network models MT Zimmermann, SP Leelananda, P Gniewek, Y Feng, RL Jernigan, ... Journal of structural and functional genomics 12 (2), 137-147, 2011 | 24 | 2011 |
| Single Nucleotide Polymorphism Discovery in Bovine Pituitary Gland Using RNA-Seq Technology CS Pareek, R Smoczyński, HN Kadarmideen, P Dziuba, P Błaszczyk, ... PloS one 11 (9), e0161370, 2016 | 22 | 2016 |
| PTEN deletion drives aberrations of DNA methylome and transcriptome in different stages of prostate cancer C Wang, Y Feng, C Zhang, D Cheng, R Wu, Y Yang, D Sargsyan, ... The FASEB Journal 34 (1), 1304-1318, 2020 | 20 | 2020 |
| Single nucleotide polymorphism discovery in bovine liver using RNA-seq technology CS Pareek, P Błaszczyk, P Dziuba, U Czarnik, L Fraser, P Sobiech, ... PloS one 12 (2), e0172687, 2017 | 19 | 2017 |
| Genome-wide histone acetylation correlates with active transcription in maize W Zhang, N Garcia, Y Feng, H Zhao, J Messing Genomics 106 (4), 214-220, 2015 | 19 | 2015 |
| Massive Human Co‐Expression Network and Its Medical Applications Y Feng, J Hurst, M Almeida‐De‐Macedo, X Chen, L Li, N Ransom, ... Chemistry & biodiversity 9 (5), 868-887, 2012 | 19 | 2012 |
| Post‐transcriptional adaptation of the aquatic plant Spirodela polyrhiza under stress and hormonal stimuli P Fourounjian, J Tang, B Tanyolac, Y Feng, B Gelfand, A Kakrana, M Tu, ... The Plant Journal, 2019 | 16 | 2019 |
| Statistical contact potentials in protein coarse-grained modeling: from pair to multi-body potentials SP Leelananda, Y Feng, P Gniewek, A Kloczkowski, RL Jernigan Multiscale Approaches to Protein Modeling, 127-157, 2011 | 14 | 2011 |
