Landscape of somatic single-nucleotide and copy-number mutations in uterine serous carcinoma S Zhao, M Choi, JD Overton, S Bellone, DM Roque, E Cocco, F Guzzo, ... Proceedings of the National Academy of Sciences 110 (8), 2916-2921, 2013 | 312 | 2013 |
Mutational landscape of uterine and ovarian carcinosarcomas implicates histone genes in epithelial–mesenchymal transition S Zhao, S Bellone, S Lopez, D Thakral, C Schwab, DP English, J Black, ... Proceedings of the National Academy of Sciences 113 (43), 12238-12243, 2016 | 205 | 2016 |
Genomic characterization of sarcomatoid transformation in clear cell renal cell carcinoma M Bi, S Zhao, JW Said, MJ Merino, AJ Adeniran, Z Xie, CB Nawaf, J Choi, ... Proceedings of the National Academy of Sciences 113 (8), 2170-2175, 2016 | 113 | 2016 |
Allele-specific open chromatin in human iPSC neurons elucidates functional disease variants S Zhang, H Zhang, Y Zhou, M Qiao, S Zhao, A Kozlova, J Shi, AR Sanders, ... Science 369 (6503), 561-565, 2020 | 83 | 2020 |
Whole-exome sequencing of cervical carcinomas identifies activating ERBB2 and PIK3CA mutations as targets for combination therapy L Zammataro, S Lopez, S Bellone, F Pettinella, E Bonazzoli, E Perrone, ... Proceedings of the National Academy of Sciences 116 (45), 22730-22736, 2019 | 66 | 2019 |
Integrated mutational landscape analysis of uterine leiomyosarcomas J Choi, A Manzano, W Dong, S Bellone, E Bonazzoli, L Zammataro, X Yao, ... Proceedings of the National Academy of Sciences 118 (15), e2025182118, 2021 | 61 | 2021 |
Detailed modeling of positive selection improves detection of cancer driver genes S Zhao, J Liu, P Nanga, Y Liu, AE Cicek, N Knoblauch, C He, M Stephens, ... Nature communications 10 (1), 3399, 2019 | 59 | 2019 |
Serial exome analysis of disease progression in premalignant gammopathies S Zhao, M Choi, C Heuck, S Mane, B Barlogie, RP Lifton, MV Dhodapkar Leukemia 28 (7), 1548-1552, 2014 | 54 | 2014 |
Dual CCNE1/PIK3CA targeting is synergistic in CCNE1-amplified/PIK3CA-mutated uterine serous carcinomas in vitro and in vivo E Cocco, S Lopez, J Black, S Bellone, E Bonazzoli, F Predolini, F Ferrari, ... British journal of cancer 115 (3), 303-311, 2016 | 37 | 2016 |
A statistical framework for mapping risk genes from de novo mutations in whole-genome-sequencing studies Y Liu, Y Liang, AE Cicek, Z Li, J Li, RA Muhle, M Krenzer, Y Mei, Y Wang, ... The American Journal of Human Genetics 102 (6), 1031-1047, 2018 | 30 | 2018 |
Silencing of transposable elements may not be a major driver of regulatory evolution in primate iPSCs MC Ward, S Zhao, K Luo, BJ Pavlovic, MM Karimi, M Stephens, Y Gilad Elife 7, e33084, 2018 | 29 | 2018 |
Adjusting for genetic confounders in transcriptome-wide association studies leads to reliable detection of causal genes S Zhao, W Crouse, S Qian, K Luo, M Stephens, X He bioRxiv, 2022.09. 27.509700, 2022 | 3 | 2022 |
Adjusting for genetic confounders in transcriptome-wide association studies improves discovery of risk genes of complex traits S Zhao, W Crouse, S Qian, K Luo, M Stephens, X He Nature Genetics, 1-12, 2024 | 2 | 2024 |
A Bayesian method for rare variant analysis using functional annotations and its application to Autism S Han, N Knoblauch, G Wang, S Zhao, Y Liu, Y Xie, W Sheng, HT Nguyen, ... bioRxiv, 828061, 2019 | 2 | 2019 |
Allele-specific open chromatin in human iPSC neurons elucidates functional non-coding disease variants S Zhang, H Zhang, M Qiao, Y Zhou, S Zhao, A Kozlova, J Shi, AR Sanders, ... bioRxiv, 827048, 2019 | 1 | 2019 |
Mutational landscape of uterine and ovarian carcinosarcomas. G Menderes, S Zhao, C Schwab, S Lopez, J Black, S Bellone, DA Silasi, ... Journal of Clinical Oncology 34 (15_suppl), 5589-5589, 2016 | 1 | 2016 |
Model-based analysis of positive selection significantly expands the list of cancer driver genes, including RNA methyltransferases S Zhao, J Liu, P Nanga, Y Liu, AE Cicek, N Knoblauch, C He, M Stephens, ... bioRxiv, 366823, 2018 | | 2018 |
MA16. 02 Mutational Landscape of TKI Naïve and Resistant EGFR Mutant Lung Adenocarcinomas K Hastings, J Choi, A Wurtz, Z Walther, G Cai, I Oliva, Z Zhao, S Gaffney, ... Journal of Thoracic Oncology 12 (1), S435, 2017 | | 2017 |
Mutational landscape of uterine and ovarian carcinosarcomas reveals new recurrently-mutated histone core genes as drivers of epithelial-mesenchymal transition G Menderes, S Zhao, CL Schwab, S Lopez, JD Black, E Cocco, S Bellone, ... Cancer Research 76 (14 Supplement), 135-135, 2016 | | 2016 |
MP71-12 GENOMIC CHARACTERIZATION OF SARCOMATOID TRANSFORMATION IN CLEAR CELL RENAL CELL CARCINOMA M Bi, S Zhao, M Merino, J Said, A Adeniran, C Nawaf, zuoquan Xie, ... The Journal of Urology 195 (4S), e920-e920, 2016 | | 2016 |