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Jodi A. Hadden-Perilla
Jodi A. Hadden-Perilla
Assistant Professor of Chemistry and Biochemistry, University of Delaware
Verified email at udel.edu - Homepage
Title
Cited by
Cited by
Year
All-atom molecular dynamics of virus capsids as drug targets
JR Perilla, JA Hadden, BC Goh, CG Mayne, K Schulten
The journal of physical chemistry letters 7 (10), 1836-1844, 2016
932016
All-atom molecular dynamics of the HBV capsid reveals insights into biological function and cryo-EM resolution limits
JA Hadden, JR Perilla, CJ Schlicksup, B Venkatakrishnan, A Zlotnick, ...
Elife 7, e32478, 2018
922018
Computational methodologies for real-space structural refinement of large macromolecular complexes
BC Goh, JA Hadden, RC Bernardi, A Singharoy, R McGreevy, T Rudack, ...
Annual Review of Biophysics 45, 253-278, 2016
822016
Unraveling cellulose microfibrils: a twisted tale
JA Hadden, AD French, RJ Woods
Biopolymers 99 (10), 746-756, 2013
772013
3D implementation of the symbol nomenclature for graphical representation of glycans
DF Thieker, JA Hadden, K Schulten, RJ Woods
Glycobiology 26 (8), 786-787, 2016
652016
New insights into influenza A specificity: an evolution of paradigms
Y Ji, YJB White, JA Hadden, OC Grant, RJ Woods
Current opinion in structural biology 44, 219-231, 2017
392017
Angular measurements of the dynein ring reveal a stepping mechanism dependent on a flexible stalk
LG Lippert, T Dadosh, JA Hadden, V Karnawat, BT Diroll, CB Murray, ...
Proceedings of the National Academy of Sciences 114 (23), E4564-E4573, 2017
382017
Assembly properties of hepatitis B virus core protein mutants correlate with their resistance to assembly-directed antivirals
L Ruan, JA Hadden, A Zlotnick
Journal of virology 92 (20), 10.1128/jvi. 01082-18, 2018
342018
All-atom virus simulations
JA Hadden, JR Perilla
Current opinion in virology 31, 82-91, 2018
292018
Effect of microfibril twisting on theoretical powder diffraction patterns of cellulose Iβ
JA Hadden, AD French, RJ Woods
Cellulose 21, 879-884, 2014
232014
The integrity of the intradimer interface of the Hepatitis B Virus capsid protein dimer regulates capsid self-assembly
Z Zhao, JCY Wang, CP Segura, JA Hadden-Perilla, A Zlotnick
ACS chemical biology 15 (12), 3124-3132, 2020
212020
Molecular dynamics of the viral life cycle: progress and prospects
PE Jones, C Pérez-Segura, AJ Bryer, JR Perilla, JA Hadden-Perilla
Current opinion in virology 50, 128-138, 2021
202021
Calculating binding free energies for protein–carbohydrate complexes
JA Hadden, MB Tessier, E Fadda, RJ Woods
Glycoinformatics, 431-465, 2015
202015
Multiscale modeling of hepatitis B virus capsid assembly and its dimorphism
F Mohajerani, B Tyukodi, CJ Schlicksup, JA Hadden-Perilla, A Zlotnick, ...
ACS nano 16 (9), 13845-13859, 2022
142022
All-atom md simulations of the hbv capsid complexed with at130 reveal secondary and tertiary structural changes and mechanisms of allostery
C Pérez-Segura, BC Goh, JA Hadden-Perilla
Viruses 13 (4), 564, 2021
142021
Molecular dynamics simulations of protein–drug complexes: A computational protocol for investigating the interactions of small-molecule therapeutics with biological targets and …
JA Hadden, JR Perilla
Computational drug discovery and design, 245-270, 2018
122018
Integrative structural biology of HIV-1 capsid protein assemblies: combining experiment and computation
JR Perilla, JA Hadden-Perilla, AM Gronenborn, T Polenova
Current opinion in virology 48, 57-64, 2021
112021
Experimental characterization of the hepatitis B virus capsid dynamics by solid-state NMR
AA Malär, M Callon, AA Smith, S Wang, L Lecoq, C Pérez-Segura, ...
Frontiers in Molecular Biosciences 8, 807577, 2022
102022
Green synthesis of gold and silver nanoparticles from plant extracts
C Dyal, N Nguyen, J Hadden, L Gou, L Tan, CJ Murphy, W Lynch, ...
Chem Mater 231, 301-315, 2006
102006
Scalable analysis of authentic viral envelopes on FRONTERA
F Gonzalez-Arias, T Reddy, JE Stone, JA Hadden-Perilla, JR Perilla
Computing in science & engineering 22 (6), 11-20, 2020
92020
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