| Rapid Growth of Uropathogenic Escherichia coli during Human Urinary Tract Infection VS Forsyth, CE Armbruster, SN Smith, A Pirani, AC Springman, ... MBio 9 (2), 10.1128/mbio. 00186-18, 2018 | 109 | 2018 |
| Integrated genomic and interfacility patient-transfer data reveal the transmission pathways of multidrug-resistant Klebsiella pneumoniae in a regional outbreak ES Snitkin, S Won, A Pirani, Z Lapp, RA Weinstein, K Lolans, MK Hayden Science translational medicine 9 (417), eaan0093, 2017 | 55 | 2017 |
| Genetically diverse uropathogenic Escherichia coli adopt a common transcriptional program in patients with UTIs A Sintsova, AE Frick-Cheng, S Smith, A Pirani, S Subashchandrabose, ... Elife 8, e49748, 2019 | 46 | 2019 |
| Identification of pathogenicity-associated loci in Klebsiella pneumoniae from hospitalized patients RM Martin, J Cao, W Wu, L Zhao, DM Manthei, A Pirani, E Snitkin, ... Msystems 3 (3), 10.1128/msystems. 00015-18, 2018 | 44 | 2018 |
| Phenotypic and genomic diversification in complex carbohydrate-degrading human gut bacteria NA Pudlo, K Urs, R Crawford, A Pirani, T Atherly, R Jimenez, N Terrapon, ... Msystems 7 (1), e00947-21, 2022 | 43 | 2022 |
| Genomic and Epidemiological Evidence for Community Origins of Hospital-Onset Methicillin-Resistant Staphylococcus aureus Bloodstream Infections KJ Popovich, ES Snitkin, B Hota, SJ Green, A Pirani, A Aroutcheva, ... The Journal of infectious diseases 215 (11), 1640-1647, 2017 | 42 | 2017 |
| Regional Spread of blaNDM-1-Containing Klebsiella pneumoniae ST147 in Post-Acute Care Facilities Z Lapp, R Crawford, A Miles-Jay, A Pirani, WE Trick, RA Weinstein, ... Clinical Infectious Diseases 73 (8), 1431-1439, 2021 | 25 | 2021 |
| prewas: data pre-processing for more informative bacterial GWAS K Saund, Z Lapp, SN Thiede, A Pirani, ES Snitkin Microbial Genomics 6 (5), e000368, 2020 | 15 | 2020 |
| Application of combined genomic and transfer analyses to identify factors mediating regional spread of antibiotic-resistant bacterial lineages J Wang, B Foxman, A Pirani, Z Lapp, L Mody, ES Snitkin Clinical Infectious Diseases 71 (10), e642-e649, 2020 | 11 | 2020 |
| Replication Study: Intestinal inflammation targets cancer-inducing activity of the microbiota K Eaton, A Pirani, ES Snitkin Elife 7, e34364, 2018 | 10 | 2018 |
| Replication dynamics for six gram-negative bacterial species during bloodstream infection MT Anderson, AN Brown, A Pirani, SN Smith, AL Photenhauer, Y Sun, ... Mbio 12 (4), 10.1128/mbio. 01114-21, 2021 | 9 | 2021 |
| Threshold-free genomic cluster detection to track transmission pathways in health-care settings: a genomic epidemiology analysis SE Hawken, RD Yelin, K Lolans, A Pirani, RA Weinstein, MY Lin, ... The Lancet Microbe 3 (9), e652-e662, 2022 | 3 | 2022 |
| Vaginal microbiota of adolescents and their mothers: A preliminary study of vertical transmission and persistence CM Bassis, KA Bullock, DE Sack, K Saund, A Pirani, ES Snitkin, VI Alaniz, ... Frontiers in Microbiomes 2, 1129394, 2023 | 2 | 2023 |
| Fitness barriers to spread of colistin-resistant Klebsiella pneumoniae overcome by establishing niche in patient population with elevated colistin use Z Lapp, JH Han, D Choudhary, S Castaneda, A Pirani, K Albay, ... medRxiv 2021, 2021 | 2 | 2021 |
| Strain Variation in Clostridioides difficile Cytotoxicity Associated with Genomic Variation at Both Pathogenic and Nonpathogenic Loci K Saund, A Pirani, DB Lacy, PC Hanna, E Snitkin Msphere 7 (3), e00174-22, 2022 | 1 | 2022 |
| Distinct Origins and Transmission Pathways of blaKPC Enterobacterales across Three U.S. States Z Lapp, R Octaria, SM O’Malley, TN Nguyen, H Wolford, R Crawford, ... Journal of Clinical Microbiology 61 (8), e00259-23, 2023 | | 2023 |
| Regional spread of blaNDM-1-containing Klebsiella pneumoniae Sequence Type 147 in post-acute care facilities Z Lapp, R Crawford, A Miles-Jay, A Pirani, WE Trick, RA Weinstein, ... medRxiv, 2021.03. 16.21253722, 2021 | | 2021 |
| Bad Bugs Move Alike: Regional Transmission of Antibiotic-Resistant Organisms J Wang, B Foxman, A Pirani, Z Lapp, L Mody, E Snitkin Infection Control & Hospital Epidemiology 41 (S1), s137-s138, 2020 | | 2020 |
| Evidence that vertical transmission of the vaginal microbiota can persist into adolescence CM Bassis, KA Bullock, DE Sack, K Saund, A Pirani, ES Snitkin, VI Alaniz, ... bioRxiv, 768598, 2019 | | 2019 |
| Genetically diverse uropathogenic Escherichia coli adopt a common transcriptional program in patients with urinary tract infections A Sintsova, A Frick-Cheng, S Smith, A Pirani, S Subashchandrabose, ... bioRxiv, 595207, 2019 | | 2019 |
