| Expansion of the global RNA virome reveals diverse clades of bacteriophages U Neri, YI Wolf, S Roux, AP Camargo, B Lee, D Kazlauskas, IM Chen, ... Cell 185 (21), 4023-4037. e18, 2022 | 130 | 2022 |
| Ten simple rules for documenting scientific software BD Lee PLoS computational biology 14 (12), 2018 | 61 | 2018 |
| Mining metatranscriptomes reveals a vast world of viroid-like circular RNAs BD Lee, U Neri, S Roux, YI Wolf, AP Camargo, M Krupovic, P Simmonds, ... Cell 186 (3), 646-661. e4, 2023 | 45* | 2023 |
| Python implementation of codon adaptation index BD Lee Journal of Open Source Software 3 (30), 905, 2018 | 40 | 2018 |
| DNAvisualization.org: a serverless web tool for DNA sequence visualization BD Lee, MA Timony, P Ruiz Nucleic Acids Research, 2019 | 31 | 2019 |
| Ten quick tips for deep learning in biology BD Lee, A Gitter, CS Greene, S Raschka, F Maguire, AJ Titus, MD Kessler, ... PLOS Computational Biology 18 (3), e1009803, 2022 | 28 | 2022 |
| A five-fold expansion of the global RNA virome reveals multiple new clades of RNA bacteriophages U Neri, YI Wolf, S Roux, AP Camargo, B Lee, D Kazlauskas, IM Chen, ... BioRxiv, 2022.02. 15.480533, 2022 | 22 | 2022 |
| Viroids and Viroid-like Circular RNAs: Do They Descend from Primordial Replicators? BD Lee, EV Koonin Life 12 (1), 103, 2022 | 18 | 2022 |
| ViroidDB: a database of viroids and viroid-like circular RNAs BD Lee, U Neri, CJ Oh, P Simmonds, EV Koonin Nucleic acids research 50 (D1), D432-D438, 2022 | 15 | 2022 |
| Squiggle: a user-friendly two-dimensional DNA sequence visualization tool BD Lee Bioinformatics, 2018 | 7 | 2018 |
| Ambiviricota, a novel ribovirian phylum for viruses with viroid-like properties JH Kuhn, L Botella, M de la Peña, EJ Vainio, M Krupovic, BD Lee, ... Journal of Virology, e00831-24, 2024 | 1 | 2024 |
| Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum LPP Braga, AJ Tanentzap, B Lee, SM Tsai, JM Raaijmakers, R Mendes, ... Applied Soil Ecology 190, 105018, 2023 | 1 | 2023 |
