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| Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 135 | 2020 |
| CTCF is dispensable for immune cell transdifferentiation but facilitates an acute inflammatory response G Stik, E Vidal, M Barrero, S Cuartero, M Vila-Casadesús, ... Nature genetics 52 (7), 655-661, 2020 | 100 | 2020 |
| Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome D Garrido-Martín, B Borsari, M Calvo, F Reverter, R Guigó Nature communications 12 (1), 727, 2021 | 99 | 2021 |
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| Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay D Pervouchine, Y Popov, A Berry, B Borsari, A Frankish, R Guigó Nucleic acids research 47 (10), 5293-5306, 2019 | 57 | 2019 |
| Enhancers with tissue-specific activity are enriched in intronic regions B Borsari*, P Villegas-Mirón*, S Pérez-Lluch, I Turpin, H Laayouni, ... Genome research 31 (8), 1325-1336, 2021 | 39* | 2021 |
| The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models J Rozowsky*, J Gao*, B Borsari*, YT Yang*, T Galeev*, G Gürsoy*, ... Cell 186 (7), 1493-1511. e40, 2023 | 26* | 2023 |
| The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity F Reese, B Williams, G Balderrama-Gutierrez, D Wyman, MH Çelik, ... bioRxiv, 2023 | 10 | 2023 |
| Dynamics of gene expression and chromatin marking during cell state transition B Borsari, A Abad, CC Klein, R Nurtdinov, A Esteban, E Palumbo, ... BioRxiv, 2020.11. 20.391524, 2020 | 4 | 2020 |
| chronODE: A framework to integrate time-series multi-omics data based on ordinary differential equations combined with machine learning B Borsari*, M Frank*, ES Wattenberg, K Xu, SX Liu, X Yu, M Gerstein bioRxiv, 2023.12. 13.571513, 2023 | 1 | 2023 |
| Assessing tissue-specific effects of rare and structural variants towards gene regulation with the EN-Tex personal genome resource M Jensen, T Michaels, A Su, T Galeev, S Kumar, K Xiong, B Borsari, ... EUROPEAN JOURNAL OF HUMAN GENETICS 32, 45-46, 2024 | | 2024 |
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