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Emily K Cope
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
132852019
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
9262018
In vitro antimicrobial studies of silver carbene complexes: activity of free and nanoparticle carbene formulations against clinical isolates of pathogenic bacteria
JG Leid, AJ Ditto, A Knapp, PN Shah, BD Wright, R Blust, L Christensen, ...
Journal of antimicrobial chemotherapy 67 (1), 138-148, 2012
1892012
Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences
EK Cope, AN Goldberg, SD Pletcher, SV Lynch
Microbiome 5, 1-16, 2017
1692017
Tobacco smoke mediated induction of sinonasal microbial biofilms
N Goldstein-Daruech, EK Cope, KQ Zhao, K Vukovic, JM Kofonow, ...
PloS one 6 (1), e15700, 2011
1122011
Mapping and comparing bacterial microbiota in the sinonasal cavity of healthy, allergic rhinitis, and chronic rhinosinusitis subjects
D Lal, P Keim, J Delisle, B Barker, MA Rank, N Chia, JM Schupp, ...
International forum of allergy & rhinology 7 (6), 561-569, 2017
1062017
Impact of different exercise modalities on the human gut microbiome
D Bycura, AC Santos, A Shiffer, S Kyman, K Winfree, J Sutliffe, T Pearson, ...
Sports 9 (2), 14, 2021
642021
Novel microbiome-based therapeutics for chronic rhinosinusitis
EK Cope, SV Lynch
Current allergy and asthma reports 15, 1-10, 2015
642015
The international sinonasal microbiome study: a multicentre, multinational characterization of sinonasal bacterial ecology
S Paramasivan, A Bassiouni, A Shiffer, MR Dillon, EK Cope, C Cooksley, ...
Allergy 75 (8), 2037-2049, 2020
612020
Regulation of virulence gene expression resulting from Streptococcus pneumoniae and nontypeable Haemophilus influenzae interactions in chronic disease
EK Cope, N Goldstein-Daruech, JM Kofonow, L Christensen, ...
PLoS One 6 (12), e28523, 2011
602011
Synthesis and in vitro efficacy studies of silver carbene complexes on biosafety level 3 bacteria
MJ Panzner, A Deeraksa, A Smith, BD Wright, KM Hindi, ...
European journal of inorganic chemistry 2009 (13), 1739-1745, 2009
602009
Fungal microbiota in chronic airway inflammatory disease and emerging relationships with the host immune response
I Zhang, SD Pletcher, AN Goldberg, BM Barker, EK Cope
Frontiers in Microbiology 8, 2477, 2017
522017
Flagellum-Mediated Biofilm Defense Mechanisms of Pseudomonas aeruginosa against Host-Derived Lactoferrin
JG Leid, M Kerr, C Selgado, C Johnson, G Moreno, A Smith, ME Shirtliff, ...
Infection and immunity 77 (10), 4559-4566, 2009
382009
Do the bugs in your gut eat your memories? Relationship between gut microbiota and Alzheimer’s disease
EM Borsom, K Lee, EK Cope
Brain Sciences 10 (11), 814, 2020
342020
Probiotic strategies for treatment of respiratory diseases
NA Nagalingam, EK Cope, SV Lynch
Trends in microbiology 21 (9), 485-492, 2013
342013
Loss of microbial niche specificity between the upper and lower airways in patients with cystic fibrosis
SD Pletcher, AN Goldberg, EK Cope
The Laryngoscope 129 (3), 544-550, 2019
312019
Heterogeneity of microbiota dysbiosis in chronic rhinosinusitis: potential clinical implications and microbial community mechanisms contributing to sinonasal inflammation
K Lee, SD Pletcher, SV Lynch, AN Goldberg, EK Cope
Frontiers in cellular and infection microbiology 8, 168, 2018
302018
Unraveling the role of the microbiome in chronic rhinosinusitis
AJ Psaltis, BW Mackenzie, EK Cope, VR Ramakrishnan
Journal of Allergy and Clinical Immunology 149 (5), 1513-1521, 2022
292022
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ Preprints 6: e27295v2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
262018
Mucosal expression of aquaporin 5 and epithelial barrier proteins in chronic rhinosinusitis with and without nasal polyps
AH Shikani, VK Sidhaye, RJ Basaraba, HJ Shikani, MA Alqudah, N Kirk, ...
American journal of otolaryngology 35 (3), 377-383, 2014
262014
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