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Fangming Xie
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Comparative cellular analysis of motor cortex in human, marmoset and mouse
TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ...
Nature 598 (7879), 111-119, 2021
3822021
Comprehensive analysis of single cell ATAC-seq data with SnapATAC
R Fang, S Preissl, Y Li, X Hou, J Lucero, X Wang, A Motamedi, AK Shiau, ...
Nature communications 12 (1), 1337, 2021
2742021
A multimodal cell census and atlas of the mammalian primary motor cortex
Principal manuscript editors, Analysis coordination, ...
Nature 598 (7879), 86-102, 2021
2632021
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ...
Nature 598 (7879), 103-110, 2021
1932021
Single-cell sequencing of brain cell transcriptomes and epigenomes
EJ Armand, J Li, F Xie, C Luo, EA Mukamel
Neuron 109 (1), 11-26, 2021
1692021
Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse
TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ...
BioRxiv, 2020.03. 31.016972, 2020
732020
Single nucleus multi-omics identifies human cortical cell regulatory genome diversity
C Luo, H Liu, F Xie, EJ Armand, K Siletti, TE Bakken, R Fang, WI Doyle, ...
Cell genomics 2 (3), 2022
672022
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
Z Yao, H Liu, F Xie, S Fischer, AS Booeshaghi, RS Adkins, AI Aldridge, ...
Biorxiv, 2020.02. 29.970558, 2020
612020
Single nucleus multi-omics links human cortical cell regulatory genome diversity to disease risk variants
C Luo, H Liu, F Xie, EJ Armand, K Siletti, TE Bakken, R Fang, WI Doyle, ...
Biorxiv, 2019.12. 11.873398, 2019
312019
SnapATAC: A comprehensive analysis package for single cell ATAC-seq
R Fang, S Preissl, Y Li, X Hou, J Lucero, X Wang, A Motamedi, AK Shiau, ...
BioRxiv, 615179, 2019
302019
Growth of metal–semiconductor core–multishell nanorods with optimized field confinement and nonlinear enhancement
F Nan, FM Xie, S Liang, L Ma, DJ Yang, XL Liu, JH Wang, ZQ Cheng, ...
Nanoscale 8 (23), 11969-11975, 2016
272016
A multimodal cell census and atlas of the mammalian primary motor cortex
BRAIN Initiative Cell Census Network (BICCN), RS Adkins, AI Aldridge, ...
Biorxiv, 2020.10. 19.343129, 2020
222020
Orientational phase transitions and the assembly of viral capsids
S Dharmavaram, F Xie, W Klug, J Rudnick, R Bruinsma
Physical Review E 95 (6), 062402, 2017
202017
A guide to the BRAIN Initiative Cell Census Network data ecosystem
M Hawrylycz, ME Martone, GA Ascoli, JG Bjaalie, HW Dong, SS Ghosh, ...
PLoS biology 21 (6), e3002133, 2023
172023
Landau theory and the emergence of chirality in viral capsids
S Dharmavaram, F Xie, W Klug, J Rudnick, R Bruinsma
Europhysics Letters 116 (2), 26002, 2016
72016
Epigenomic and chromosomal architectural reconfiguration in developing human frontal cortex and hippocampus
MG Heffel, J Zhou, Y Zhang, DS Lee, K Hou, OP Alonso, K Abuhanna, ...
bioRxiv, 2022.10. 07.511350, 2022
32022
Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes
F Xie, EJ Armand, Z Yao, H Liu, A Bartlett, MM Behrens, YE Li, JD Lucero, ...
Cell Genomics 3 (7), 2023
12023
Vision sculpts a continuum of L2/3 cell types in the visual cortex during the critical period
F Xie, S Jain, S Butrus, K Shekhar, LL Zipursky
bioRxiv, 2023.12. 18.572244, 2023
2023
Integrated computational analysis of brain cell transcriptomes and epigenomes
F Xie
University of California, San Diego, 2021
2021
Viral Capsid Assembly and Orientational Phase Transitions
S Dharmavaram, F Xie, J Rudnick, W Klug, R Bruinsma, SD Team
APS March Meeting Abstracts 2018, A54. 003, 2018
2018
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Articles 1–20