| MentaLiST–A fast MLST caller for large MLST schemes P Feijao, HT Yao, D Fornika, J Gardy, W Hsiao, C Chauve, ... Microbial genomics 4 (2), e000146, 2018 | 63 | 2018 |
| Stochastic sampling of structural contexts improves the scalability and accuracy of RNA 3d module identification R Sarrazin-Gendron, HT Yao, V Reinharz, CG Oliver, Y Ponty, ... International Conference on Research in Computational Molecular Biology, 186-201, 2020 | 16 | 2020 |
| Taming disruptive base pairs to reconcile positive and negative structural design of RNA HT Yao, J Waldispühl, Y Ponty, S Will RECOMB 2021-25th international conference on research in computational …, 2021 | 12 | 2021 |
| Exponentially few RNA structures are designable HT Yao, C Chauve, M Regnier, Y Ponty Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019 | 6 | 2019 |
| Developing complex RNA design applications in the Infrared framework HT Yao, Y Ponty, S Will RNA Folding-Methods and Protocols, 2022 | 3 | 2022 |
| Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package HT Yao, R Lorenz, IL Hofacker, PF Stadler Algorithms for Molecular Biology 18 (1), 8, 2023 | 2 | 2023 |
| Infrared: a declarative tree decomposition-powered framework for bioinformatics HT Yao, B Marchand, SJ Berkemer, Y Ponty, S Will Algorithms for Molecular Biology 19 (1), 13, 2024 | 1 | 2024 |
| Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction S von Löhneysen, T Spicher, Y Varenyk, HT Yao, R Lorenz, I Hofacker, ... International Symposium on Bioinformatics Research and Applications, 267-279, 2023 | 1 | 2023 |
| Local decomposition in RNA structural design HT Yao McGill University (Canada), 2021 | 1 | 2021 |
| Advanced design of structural RNAs using RNARedPrint Y Ponty, S Hammer, HT Yao, S Will RNA Bioinformatics, 1-15, 2021 | 1 | 2021 |
| Sequence design for RNA-RNA interactions M Waldl, HT Yao, I Hofacker | | 2024 |
| Salt corrections for RNA secondary structures in the ViennaRNA package HT Yao, R Lorenz, IL Hofacker, PF Stadler bioRxiv, 2023.04. 07.536000, 2023 | | 2023 |
