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Junjie Zhu
Junjie Zhu
Apple Inc.
Verified email at stanford.edu - Homepage
Title
Cited by
Cited by
Year
Massively parallel digital transcriptional profiling of single cells
GXY Zheng, JM Terry, P Belgrader, P Ryvkin, ZW Bent, R Wilson, ...
Nature communications 8 (1), 14049, 2017
51382017
Organoid modeling of the tumor immune microenvironment
JT Neal, X Li, J Zhu, V Giangarra, CL Grzeskowiak, J Ju, IH Liu, SH Chiou, ...
Cell 175 (7), 1972-1988. e16, 2018
10202018
Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning
B Wang, J Zhu, E Pierson, D Ramazzotti, S Batzoglou
Nature methods 14 (4), 414-416, 2017
6362017
Progenitor identification and SARS-CoV-2 infection in human distal lung organoids
AA Salahudeen, SS Choi, A Rustagi, J Zhu, V van Unen, SM de la O, ...
Nature 588 (7839), 670-675, 2020
3182020
Inflammatory cytokine TNFα promotes the long-term expansion of primary hepatocytes in 3D culture
WC Peng, CY Logan, M Fish, T Anbarchian, F Aguisanda, ...
Cell 175 (6), 1607-1619. e15, 2018
2432018
Assessment of network module identification across complex diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature methods 16 (9), 843-852, 2019
2402019
Network Enhancement: a general method to denoise weighted biological networks
B Wang, A Pourshafeie, M Zitnik, J Zhu, CD Bustamante, S Batzoglou, ...
Nature Communications 9 (1), 3108, 2018
1352018
scRNASeqDB: a database for RNA-Seq based gene expression profiles in human single cells
Y Cao, J Zhu, P Jia, Z Zhao
Genes 8 (12), 368, 2017
912017
SIMLR: A tool for large‐scale genomic analyses by multi‐kernel learning
B Wang, D Ramazzotti, L De Sano, J Zhu, E Pierson, S Batzoglou
Proteomics 18 (2), 1700232, 2018
852018
Exploratory gene ontology analysis with interactive visualization
J Zhu, Q Zhao, E Katsevich, C Sabatti
Scientific reports 9 (1), 7793, 2019
212019
SIMLR: a tool for large-scale single-cell analysis by multi-kernel learning
B Wang, D Ramazzotti, L De Sano, J Zhu, E Pierson, S Batzoglou
BioRxiv, 118901, 2017
142017
Integrative spatial single-cell analysis with graph-based feature learning
J Zhu, C Sabatti
Biorxiv, 2020.08. 12.248971, 2020
132020
Selection-adjusted inference: an application to confidence intervals for cis-eQTL effect sizes
S Panigrahi, J Zhu, C Sabatti
Biostatistics, 2018
132018
L (d, 1)-labelings of the ege-path-replacement by factorization of graphs
N Karst, J Oehrlein, DS Troxell, J Zhu
Journal of Combinatorial Optimization 30 (1), 34-41, 2015
132015
Water detection with high-resolution SAR image based on texture and imaging knowledge
J ZHU, H GUO, X FAN, C DING, L LI, Y LI
Advances in Water Science 17 (4), 525-530, 2006
9*2006
Progenitor identification and SARS-CoV-2 infection in long-term human distal lung organoid cultures (preprint)
AA Salahudeen, SS Choi, A Rustagi, J Zhu, RA Flynn, M Margalef-Català, ...
82020
Asymmetric total synthesis of (+)-Minfiensine by an asymmetric cascade cyclization strategy
ZX Zhang, SC Chen, L Jiao
Synlett 28 (17), 2199-2204, 2017
72017
Unsupervised learning from noisy networks with applications to hi-c data
B Wang, J Zhu, A Pourshafeie, O Ursu, S Batzoglou, A Kundaje
Advances in Neural Information Processing Systems 29, 2016
72016
On the L (2, 1)-labelings of amalgamations of graphs
SS Adams, N Howell, N Karst, DS Troxell, J Zhu
Discrete Applied Mathematics 161 (7-8), 881-888, 2013
62013
SIMLR: a tool for large-scale single-cell analysis by multi-kernel learning. bioRxiv
B Wang, D Ramazzotti, L De Sano, J Zhu, E Pierson, S Batzoglou
52017
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Articles 1–20