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Mallory Freeberg
Mallory Freeberg
EMBL European Bioinformatics Institute (EMBL-EBI)
Verified email at jhu.edu
Title
Cited by
Cited by
Year
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
8032018
LARP1 functions as a molecular switch for mTORC1-mediated translation of an essential class of mRNAs
S Hong, MA Freeberg, T Han, A Kamath, Y Yao, T Fukuda, T Suzuki, ...
Elife 6, e25237, 2017
1992017
Community-driven data analysis training for biology
B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ...
Cell systems 6 (6), 752-758. e1, 2018
1722018
Glycolytic enzymes coalesce in G bodies under hypoxic stress
M Jin, GG Fuller, T Han, Y Yao, AF Alessi, MA Freeberg, NP Roach, ...
Cell reports 20 (4), 895-908, 2017
1502017
GA4GH: International policies and standards for data sharing across genomic research and healthcare
HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ...
Cell genomics 1 (2), 2021
1342021
The Caenorhabditis elegans HEN1 Ortholog, HENN-1, Methylates and Stabilizes Select Subclasses of Germline Small RNAs
AC Billi, AF Alessi, V Khivansara, T Han, M Freeberg, S Mitani, JK Kim
PLoS genetics 8 (4), e1002617, 2012
1282012
Transcriptional regulation by Pho23 modulates the frequency of autophagosome formation
M Jin, D He, SK Backues, MA Freeberg, X Liu, JK Kim, DJ Klionsky
Current Biology 24 (12), 1314-1322, 2014
1112014
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
MA Freeberg, T Han, JJ Moresco, A Kong, YC Yang, ZJ Lu, JR Yates, ...
Genome biology 14, 1-20, 2013
1112013
RNA promotes phase separation of glycolysis enzymes into yeast G bodies in hypoxia
GG Fuller, T Han, MA Freeberg, JJ Moresco, A Ghanbari Niaki, NP Roach, ...
Elife 9, e48480, 2020
732020
The European genome-phenome archive in 2021
MA Freeberg, LA Fromont, T D’Altri, AF Romero, JI Ciges, A Jene, G Kerry, ...
Nucleic Acids Research 50 (D1), D980-D987, 2022
702022
A Conserved Upstream Motif Orchestrates Autonomous, Germline-Enriched Expression of Caenorhabditis elegans piRNAs
AC Billi, MA Freeberg, AM Day, SY Chun, V Khivansara, JK Kim
PLoS genetics 9 (3), e1003392, 2013
642013
MORC-1 integrates nuclear RNAi and transgenerational chromatin architecture to promote germline immortality
NE Weiser, DX Yang, S Feng, N Kalinava, KC Brown, J Khanikar, ...
Developmental cell 41 (4), 408-423. e7, 2017
592017
The Data Use Ontology to streamline responsible access to human biomedical datasets
J Lawson, MN Cabili, G Kerry, T Boughtwood, A Thorogood, P Alper, ...
Cell Genomics 1 (2), 2021
422021
A Novel Long Non-Coding RNA in the hTERT Promoter Region Regulates hTERT Expression
S Malhotra, MA Freeberg, SJ Winans, J Taylor, KL Beemon
Non-coding RNA 4 (1), 1, 2017
302017
Guidelines for reporting single-cell RNA-seq experiments
A Füllgrabe, N George, M Green, P Nejad, B Aronow, SK Fexova, ...
Nature biotechnology 38 (12), 1384-1386, 2020
282020
Casein kinase II promotes target silencing by miRISC through direct phosphorylation of the DEAD-box RNA helicase CGH-1
AF Alessi, V Khivansara, T Han, MA Freeberg, JJ Moresco, PG Tu, ...
Proceedings of the National Academy of Sciences 112 (52), E7213-E7222, 2015
272015
EMBL’s European bioinformatics Institute (EMBL-EBI) in 2022
M Thakur, A Bateman, C Brooksbank, M Freeberg, M Harrison, M Hartley, ...
Nucleic Acids Research 51 (D1), D9-D17, 2023
192023
Galaxy Training Network, Taylor J, Backofen R, Nekrutenko A, Grüning B
B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ...
Community-driven data analysis training for biology. Cell Syst 6 (6), 752-758, 2018
162018
piRNAs and siRNAs collaborate in Caenorhabditis elegans genome defense
AC Billi, MA Freeberg, JK Kim
Genome biology 13, 1-3, 2012
82012
A Solve-RD ClinVar-based reanalysis of 1522 index cases from ERN-ITHACA reveals common pitfalls and misinterpretations in exome sequencing
AS Denommé-Pichon, L Matalonga, E de Boer, A Jackson, E Benetti, ...
Genetics in Medicine 25 (4), 100018, 2023
72023
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