| Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening IC Duru, P Laine, M Andreevskaya, L Paulin, S Kananen, S Tynkkynen, ... International journal of food microbiology 281, 10-22, 2018 | 76 | 2018 |
| High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes IC Duru, FI Bucur, M Andreevskaya, B Nikparvar, A Ylinen, ... BMC Genomics 22 (1), 1-20, 2021 | 22 | 2021 |
| Transcriptomic time-series analysis of cold-and heat-shock response in psychrotrophic lactic acid bacteria IC Duru, A Ylinen, S Belanov, AA Pulido, L Paulin, P Auvinen BMC genomics 22 (1), 1-16, 2021 | 22 | 2021 |
| Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing IC Duru, M Andreevskaya, P Laine, TM Rode, A Ylinen, T Løvdal, N Bar, ... BMC genomics 21 (1), 1-14, 2020 | 19 | 2020 |
| Multiomics implicate gut microbiota in altered lipid and energy metabolism in Parkinson’s disease PAB Pereira, DK Trivedi, J Silverman, IC Duru, L Paulin, P Auvinen, ... NPJ Parkinson's disease 8 (1), 1-17, 2022 | 16 | 2022 |
| Analysis of temporal gene regulation of Listeria monocytogenes revealed distinct regulatory response modes after exposure to high pressure processing B Nikparvar, M Andreevskaya, IC Duru, FI Bucur, L Grigore-Gurgu, ... BMC genomics 22 (1), 1-15, 2021 | 7 | 2021 |
| Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map OP Smolander, D Blande, V Ahola, P Rastas, J Tanskanen, JI Kammonen, ... GigaScience 11, 2022 | 5 | 2022 |
| The complete genome sequence of Listeria monocytogenes strain S2542 and expression of selected genes under high-pressure processing IC Duru, FI Bucur, M Andreevskaya, A Ylinen, P Crauwels, ... BMC Research Notes 14 (1), 1-6, 2021 | 3 | 2021 |
| Transcriptomic analysis of food-related microorganisms: Cheese microbiota, food spoilage lactic acid bacteria, and foodborne pathogens IC Duru Helsingin yliopisto, 2021 | 2 | 2021 |
| RNA editing, RNA modifications, and transcriptional units in Listeria monocytogenes IC Duru, A Ylinen, L Grigore-Gurgu, CU Riedel, L Paulin, P Auvinen | 1 | 2022 |
| Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map D Blande, OP Smolander, V Ahola, P Rastas, J Tanskanen, JI Kammonen, ... bioRxiv, 2020 | 1 | 2020 |
| Comparison of phage and plasmid populations present in the gut microbiota of Parkinson's disease patients A Lecomte, IC Duru, P Laine, TK Shishido, J Suppula, L Paulin, ... bioRxiv, 2023.10. 23.563061, 2023 | | 2023 |
| Metagenome-assembled microbial genomes from Parkinson's disease fecal samples IC Duru, A Lecomte, TK Shishido, P Laine, J Suppula, L Paulin, ... bioRxiv, 2023.02. 27.526590, 2023 | | 2023 |
| Genomic and transcriptomic analysis of Lactobacillus rhamnosus LC705 IC Duru Helsingin yliopisto, 2017 | | 2017 |
