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Erik Wright
Erik Wright
Associate Professor, Department of Biomedical Informatics, University of Pittsburgh
Verified email at pitt.edu - Homepage
Title
Cited by
Cited by
Year
Using DECIPHER v2.0 to Analyze Big Biological Sequence Data in R
ES Wright
The R Journal 8 (1), 352-359, 2016
7442016
DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences
ES Wright, LS Yilmaz, DR Noguera
Applied and environmental microbiology 78 (3), 717-725, 2012
7392012
IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences
A Murali, A Bhargava, ES Wright
Microbiome 6, 1-14, 2018
4032018
DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment
ES Wright
BMC bioinformatics 16, 1-14, 2015
3032015
Quality filtering of Illumina index reads mitigates sample cross-talk
ES Wright, KH Vetsigian
BMC genomics 17, 1-7, 2016
1192016
Inhibitory interactions promote frequent bistability among competing bacteria
ES Wright, KH Vetsigian
Nature communications 7 (1), 11274, 2016
1102016
Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates
ES Wright, LS Yilmaz, S Ram, JM Gasser, GW Harrington, DR Noguera
Environmental microbiology 16 (5), 1354-1365, 2014
812014
Automated Design of Probes for rRNA-Targeted Fluorescence In Situ Hybridization Reveals the Advantages of Using Dual Probes for Accurate Identification
ES Wright, LS Yilmaz, AM Corcoran, HE Ökten, DR Noguera
Applied and environmental microbiology 80 (16), 5124-5133, 2014
552014
RNAconTest: comparing tools for noncoding RNA multiple sequence alignment based on structural consistency
ES Wright
RNA 26 (5), 531-540, 2020
412020
Identification of antibiotic pairs that evade concurrent resistance via a retrospective analysis of antimicrobial susceptibility test results
AM Beckley, ES Wright
The Lancet Microbe 2 (10), e545-e554, 2021
312021
Stochastic exits from dormancy give rise to heavy‐tailed distributions of descendants in bacterial populations
ES Wright, KH Vetsigian
Molecular ecology 28 (17), 3915-3928, 2019
282019
Mathematical tools to optimize the design of oligonucleotide probes and primers
DR Noguera, ES Wright, P Camejo, LS Yilmaz
Applied microbiology and biotechnology 98, 9595-9608, 2014
272014
Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics
LS Yilmaz, A Loy, ES Wright, M Wagner, DR Noguera
Public Library of Science 7 (8), e43862, 2012
212012
Exclusivity offers a sound yet practical species criterion for bacteria despite abundant gene flow
ES Wright, DA Baum
BMC genomics 19, 1-12, 2018
162018
Parallel evolution between genomic segments of seasonal human influenza viruses reveals RNA-RNA relationships
JE Jones, V Le Sage, GH Padovani, M Calderon, ES Wright, S Lakdawala
eLife, 2021
152021
Multi-stable bacterial communities exhibit extreme sensitivity to initial conditions
ES Wright, R Gupta, KH Vetsigian
FEMS Microbiology Ecology 97 (6), fiab073, 2021
122021
DesignSignatures: a tool for designing primers that yields amplicons with distinct signatures
ES Wright, KH Vetsigian
Bioinformatics 32 (10), 1565-1567, 2016
122016
Ten simple rules for hitting a home run with your elevator pitch
WR Morgan, ES Wright
PLoS Computational Biology 17 (3), e1008756, 2021
102021
AssessORF: combining evolutionary conservation and proteomics to assess prokaryotic gene predictions
DR Korandla, JM Wozniak, A Campeau, DJ Gonzalez, ES Wright
Bioinformatics 36 (4), 1022-1029, 2020
102020
SARS-CoV-2 genome evolution exposes early human adaptations
ES Wright, SS Lakdawala, VS Cooper
bioRxiv, 2020.05. 26.117069, 2020
62020
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Articles 1–20