| DGIdb 3.0: a redesign and expansion of the drug–gene interaction database KC Cotto, AH Wagner, YY Feng, S Kiwala, AC Coffman, G Spies, ... Nucleic acids research 46 (D1), D1068-D1073, 2018 | 756 | 2018 |
| CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer M Griffith, NC Spies, K Krysiak, JF McMichael, AC Coffman, AM Danos, ... Nature genetics 49 (2), 170-174, 2017 | 532 | 2017 |
| pVACtools: a computational toolkit to identify and visualize cancer neoantigens J Hundal, S Kiwala, J McMichael, CA Miller, H Xia, AT Wollam, CJ Liu, ... Cancer immunology research 8 (3), 409-420, 2020 | 155 | 2020 |
| A Phase II Trial of Neoadjuvant MK-2206, an AKT Inhibitor, with Anastrozole in Clinical Stage II or III PIK3CA-Mutant ER-Positive and HER2-Negative Breast Cancer CX Ma, V Suman, MP Goetz, D Northfelt, ME Burkard, F Ademuyiwa, ... Clinical Cancer Research 23 (22), 6823-6832, 2017 | 79 | 2017 |
| RegTools: Integrated analysis of genomic and transcriptomic data for discovery of splicing variants in cancer YY Feng, A Ramu, KC Cotto, ZL Skidmore, J Kunisaki, DF Conrad, Y Lin, ... BioRxiv 10, 436634, 2018 | 50 | 2018 |
| Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer KC Cotto, YY Feng, A Ramu, M Richters, SL Freshour, ZL Skidmore, H Xia, ... Nature communications 14 (1), 1589, 2023 | 45 | 2023 |
| Accounting for proximal variants improves neoantigen prediction J Hundal, S Kiwala, YY Feng, CJ Liu, R Govindan, WC Chapman, ... Nature genetics 51 (1), 175-179, 2019 | 40 | 2019 |
| A primate temporal cortex–zona incerta pathway for novelty seeking T Ogasawara, F Sogukpinar, K Zhang, YY Feng, J Pai, A Jezzini, ... Nature neuroscience 25 (1), 50-60, 2022 | 37 | 2022 |
| PVACtools: a computational toolkit to identify and visualize cancer neoantigens. Cancer Immunol. Res. 2020; 8: 409–420. doi: 10.1158/2326-6066 J Hundal, S Kiwala, J McMichael, CA Miller, H Xia, AT Wollam, CJ Liu, ... CIR-19-0401.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0 | 11 | |
| A neural mechanism for conserved value computations integrating information and rewards ES Bromberg-Martin, YY Feng, T Ogasawara, JK White, K Zhang, ... bioRxiv, 2022.08. 14.503903, 2022 | 10 | 2022 |
| Clinical implications of neoepitope landscapes for adult and pediatric cancers YY Feng, OL Griffith, M Griffith Genome medicine 9 (1), 1-4, 2017 | 6 | 2017 |
| Dorsal raphe neurons signal integrated value during multi-attribute decision-making YY Feng, ES Bromberg-Martin, IE Monosov bioRxiv, 2023.08. 17.553745, 2023 | 3 | 2023 |
| Neuronal mechanisms of novelty seeking T Ogasawara, F Sogukpinar, K Zhang, YY Feng, J Pai, A Jezzini, ... BioRxiv, 2021.03. 12.435019, 2021 | 3 | 2021 |
| RegTools: Integrative analysis of genomic and transcriptomic data to identify splice altering mutations across 35 cancer types KC Cotto, YY Feng, ZL Skidmore, A Ramu, J Kunisaki, DF Conrad, Y Lin, ... Cancer Research 80 (16_Supplement), 2136-2136, 2020 | 3 | 2020 |
| 8. Integrating genomic and transcriptomic data to identify splice altering mutations across 35 cancer types K Cotto, YY Feng, Z Skidmore, A Ramu, J Kunisaki, D Conrad, Y Lin, ... Cancer Genetics 244, 3-4, 2020 | 1 | 2020 |
| Application of RegTools to TCGA samples for the identification of tumor-specific splice variants KC Cotto, YY Feng, ZL Skidmore, OL Griffith, M Griffith Cancer Research 79 (13_Supplement), 2487-2487, 2019 | 1 | 2019 |
| 68. Integrative analysis of genomic and transcriptomic data using RegTools to identify splice-altering mutations within bulk K Cotto, YY Feng, A Ramu, M Richters, S Freshour, Z Skidmore, ... Cancer Genetics 268, 22, 2022 | | 2022 |
| 26. Community engagement for crowd-sourcing clinically relevant somatic variants, the CIViC experience. K Krysiak, A Danos, A Wagner, J McMichael, A Coffman, S Kiwala, ... Cancer Genetics 244, 10, 2020 | | 2020 |
| 33. Aggregating evidence to determine the clinical significance of cancer variants in the CIViC knowledgebase K Krysiak, A Danos, A Wagner, J McMichael, S Kiwala, A Coffman, ... Cancer Genetics 233, S14, 2019 | | 2019 |
| 21. Correcting neoantigens by accounting for proximal variants J Hundal, S Kiwala, YY Feng, CJ Liu, J McMichael, CA Miller, H Xia, ... Cancer Genetics 233, S9, 2019 | | 2019 |
