Heterogeneous Multi-Layered Network Model for Omics Data Integration and Analysis B Lee, S Zhang, A Poleksic, L Xie Frontiers in Genetics 10, 1381, 2020 | 87 | 2020 |
Molecular Mechanics-Driven Graph Neural Network with Multiplex Graph for Molecular Structures S Zhang, Y Liu, L Xie Machine Learning for Structural Biology Workshop (MLSB) at NeurIPS 2020, 2020 | 54 | 2020 |
Improving Attention Mechanism in Graph Neural Networks via Cardinality Preservation S Zhang, L Xie International Joint Conference on Artificial Intelligence (IJCAI 2020), 2020 | 51 | 2020 |
End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins T Cai, L Xie, S Zhang, M Chen, D He, A Badkul, Y Liu, HK Namballa, ... PLOS Computational Biology 19 (1), e1010851, 2023 | 10* | 2023 |
Efficient and Accurate Physics-aware Multiplex Graph Neural Networks for 3D Small Molecules and Macromolecule Complexes S Zhang, Y Liu, L Xie arXiv preprint arXiv:2206.02789, 2022 | 8 | 2022 |
Theoretical study of adsorption and dehydrogenation of C2H4 on Cu (410) S Zhang, Y Sun, W Zhang, Z Li Chinese Journal of Chemical Physics 31 (4), 485-491, 2018 | 6 | 2018 |
Physics-aware Graph Neural Network for Accurate RNA 3D Structure Prediction S Zhang, Y Liu, L Xie Machine Learning for Structural Biology Workshop (MLSB) at NeurIPS 2022, 2022 | 4 | 2022 |
A Universal Framework for Accurate and Efficient Geometric Deep Learning of Molecular Systems S Zhang, Y Liu, L Xie Scientific Reports 13 (1), 19171, 2023 | 3 | 2023 |
Protein Language Model-Powered 3D Ligand Binding Site Prediction from Protein Sequence S Zhang, L Xie AI for Science Workshop at NeurIPS 2023, 2023 | | 2023 |
TrustAffinity: accurate, reliable and scalable out-of-distribution protein-ligand binding affinity prediction using trustworthy deep learning A Badkul, L Xie, S Zhang, L Xie New Frontiers of AI for Drug Discovery and Development (AI4D3) Workshop at …, 2023 | | 2023 |
Method and apparatus for designing ligand molecules Y Yang, J Lu, S Zhang, H Zhou WO Patent WO2023155724A1, 2023 | | 2023 |
Learning Universal and Robust 3D Molecular Representations with Graph Convolutional Networks S Zhang, Y Liu, L Xie, L Xie arXiv preprint arXiv:2307.12491, 2023 | | 2023 |
End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins T Cai, L Xie, S Zhang, M Chen, D He, A Badkul, Y Liu, HK Namballa, ... PLOS Computational Biology 19 (1), e1010851, 2023 | | 2023 |
Optimization and Application of Graph Neural Networks S Zhang City University of New York, 2023 | | 2023 |
Enhancing Attention-based Graph Neural Networks via Cardinality Preservation S Zhang, L Xie Deep Learning on Graphs Workshop at AAAI 2020, 2019 | | 2019 |