| Normalization strategies for cDNA microarrays J Schuchhardt, D Beule, A Malik, E Wolski, H Eickhoff, H Lehrach, ... Nucleic Acids Research 28 (10), e47-e47, 2000 | 452 | 2000 |
| OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data HL Röst, G Rosenberger, P Navarro, L Gillet, SM Miladinović, ... Nature biotechnology 32 (3), 219, 2014 | 388 | 2014 |
| Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps T Guo, P Kouvonen, CC Koh, LC Gillet, WE Wolski, HL Röst, ... Nature medicine 21 (4), 407, 2015 | 178 | 2015 |
| OpenMS: a flexible open-source software platform for mass spectrometry data analysis HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ... Nature methods 13 (9), 741, 2016 | 177 | 2016 |
| Building high-quality assay libraries for targeted analysis of SWATH MS data OT Schubert, LC Gillet, BC Collins, P Navarro, G Rosenberger, WE Wolski, ... Nature protocols 10 (3), 426, 2015 | 171 | 2015 |
| Systems proteomics of liver mitochondria function EG Williams, Y Wu, P Jha, S Dubuis, P Blattmann, CA Argmann, ... Science 352 (6291), aad0189, 2016 | 156 | 2016 |
| Multilayered genetic and omics dissection of mitochondrial activity in a mouse reference population Y Wu, EG Williams, S Dubuis, A Mottis, V Jovaisaite, SM Houten, ... Cell 158 (6), 1415-1430, 2014 | 156 | 2014 |
| Normalization in MALDI-TOF imaging datasets of proteins: practical considerations SO Deininger, DS Cornett, R Paape, M Becker, C Pineau, S Rauser, ... Analytical and bioanalytical chemistry 401 (1), 167-181, 2011 | 154 | 2011 |
| Analysis of differential gene expression in stretched podocytes: osteopontin enhances adaptation of podocytes to mechanical stress N Endlich, M Sunohara, W Nietfeld, EW Wolski, D Schiwek, ... The FASEB Journal 16 (13), 1850-1852, 2002 | 85 | 2002 |
| Tissue gene expression analysis using arrayed normalized cDNA libraries H Eickhoff, J Schuchhardt, I Ivanov, S Meier-Ewert, J O'Brien, A Malik, ... Genome research 10 (8), 1230-1240, 2000 | 67 | 2000 |
| The SysteMHC atlas project W Shao, PGA Pedrioli, W Wolski, C Scurtescu, E Schmid, JA Vizcaíno, ... Nucleic acids research 46 (D1), D1237-D1247, 2017 | 39 | 2017 |
| Analytical model of peptide mass cluster centres with applications WE Wolski, M Farrow, AK Emde, H Lehrach, M Lalowski, K Reinert Proteome science 4 (1), 18, 2006 | 31 | 2006 |
| Calibration of mass spectrometric peptide mass fingerprint data without specific external or internal calibrants WE Wolski, M Lalowski, P Jungblut, K Reinert BMC bioinformatics 6 (1), 203, 2005 | 31 | 2005 |
| iPortal: the swiss grid proteomics portal: Requirements and new features based on experience and usability considerations P Kunszt, L Blum, B Hullár, E Schmid, A Srebniak, W Wolski, B Rinn, ... Concurrency and Computation: Practice and Experience 27 (2), 433-445, 2015 | 29 | 2015 |
| Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process WE Wolski, M Lalowski, P Martus, R Herwig, P Giavalisco, J Gobom, ... BMC bioinformatics 6 (1), 285, 2005 | 25 | 2005 |
| Epigenetics and proteomics join transcriptomics in the quest for tuberculosis biomarkers MM Esterhuyse, J Weiner, E Caron, AG Loxton, M Iannaccone, ... MBio 6 (5), e01187-15, 2015 | 24 | 2015 |
| Targeted proteomics coming of age–SRM, PRM and DIA performance evaluated from a core facility perspective T Kockmann, C Trachsel, C Panse, A Wahlander, N Selevsek, ... Proteomics 16 (15-16), 2183-2192, 2016 | 20 | 2016 |
| Precise temporal profiling of signaling complexes in primary cells using SWATH mass spectrometry E Caron, R Roncagalli, T Hase, WE Wolski, M Choi, MG Menoita, ... Cell reports 18 (13), 3219-3226, 2017 | 15 | 2017 |
| Quantifying and localizing the mitochondrial proteome across five tissues in a mouse population EG Williams, Y Wu, W Wolski, JY Kim, J Lan, M Hasan, C Halter, P Jha, ... Molecular & Cellular Proteomics 17 (9), 1766-1777, 2018 | 7 | 2018 |
| Targeted proteomics guided by label-free quantitative proteome analysis in saliva reveal transition signatures from health to periodontal disease N Bostanci, N Selevsek, W Wolski, J Grossmann, K Bao, A Wahlander, ... Molecular & Cellular Proteomics 17 (7), 1392-1409, 2018 | 7 | 2018 |
Aebersold RETH ZurichVerified email at imsb.biol.ethz.ch
