Machine learning-driven multiscale modeling: bridging the scales with a next-generation simulation infrastructure HI Ingólfsson, H Bhatia, F Aydin, T Oppelstrup, CA López, LG Stanton, ... Journal of Chemical Theory and Computation 19 (9), 2658-2675, 2023 | 12 | 2023 |
Exploring CRD mobility during RAS/RAF engagement at the membrane K Nguyen, CA López, C Neale, QN Van, TS Carpenter, F Di Natale, ... Biophysical Journal 121 (19), 3630-3650, 2022 | 9 | 2022 |
Asynchronous reciprocal coupling of Martini 2.2 coarse-grained and CHARMM36 all-atom simulations in an automated multiscale framework CA López, X Zhang, F Aydin, R Shrestha, QN Van, CB Stanley, ... Journal of Chemical Theory and Computation 18 (8), 5025-5045, 2022 | 7 | 2022 |
Computational Design of Membrane Proteins IS Moreira, M Machuqueiro, J Mourão Humana Press, 2021 | 6 | 2021 |
Using Simulation to Understand the Role of Titration on the Stability of a Peptide–Lipid Bilayer Complex V Burns, B Mertz Langmuir 36 (41), 12272-12280, 2020 | 3 | 2020 |
In Silico Prediction of the Binding, Folding, Insertion, and Overall Stability of Membrane-Active Peptides N Frazee, V Burns, C Gupta, B Mertz Computational Design of Membrane Proteins, 161-182, 2021 | 1 | 2021 |
The pHLIP peptide slows down membrane thickness fluctuations HL Scott, V Burns, J Katsaras, AC Dixson, W Qiang, FA Heberle, B Mertz, ... Biophysical Journal 121 (3), 72a, 2022 | | 2022 |
Understanding the relationship between local environmental changes and the function of the pH Low Insertion Peptide V Burns Casamayor | | 2021 |
Understanding the relationship between local environmental changes and the function of the pH Low Insertion Peptide VB Casamayor West Virginia University, 2021 | | 2021 |
Deprotonation of C-terminal Acidic Residues Holds the Key to the Exit Pathway of pHLIP V Burns, B Mertz Biophysical Journal 118 (3), 235a, 2020 | | 2020 |
Using simulation to probe membrane defects with a pH‐sensitive peptide V Burns, B Mertz The FASEB Journal 33 (S1), 655.1-655.1, 2019 | | 2019 |