| The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level LM Rodriguez-R, S Gunturu, WT Harvey, R Rosselló-Mora, JM Tiedje, ... Nucleic acids research 46 (W1), W282-W288, 2018 | 447 | 2018 |
| Haplotype-resolved diverse human genomes and integrated analysis of structural variation P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ... Science 372 (6537), eabf7117, 2021 | 435 | 2021 |
| High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios M Byrska-Bishop, US Evani, X Zhao, AO Basile, HJ Abel, AA Regier, ... Cell 185 (18), 3426-3440. e19, 2022 | 429 | 2022 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 317 | 2023 |
| The structure, function and evolution of a complete human chromosome 8 GA Logsdon, MR Vollger, PH Hsieh, Y Mao, MA Liskovykh, S Koren, ... Nature 593 (7857), 101-107, 2021 | 260 | 2021 |
| Segmental duplications and their variation in a complete human genome MR Vollger, X Guitart, PC Dishuck, L Mercuri, WT Harvey, A Gershman, ... Science 376 (6588), eabj6965, 2022 | 168 | 2022 |
| Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads D Porubsky, P Ebert, PA Audano, MR Vollger, WT Harvey, P Marijon, ... Nature biotechnology 39 (3), 302-308, 2021 | 139 | 2021 |
| The complete sequence of a human Y chromosome A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ... Nature 621 (7978), 344-354, 2023 | 115 | 2023 |
| Semi-automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... Nature 611 (7936), 519-531, 2022 | 105 | 2022 |
| Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders D Porubsky, W Höps, H Ashraf, PH Hsieh, B Rodriguez-Martin, F Yilmaz, ... Cell 185 (11), 1986-2005. e26, 2022 | 69 | 2022 |
| A high-quality bonobo genome refines the analysis of hominid evolution Y Mao, CR Catacchio, LDW Hillier, D Porubsky, R Li, A Sulovari, ... Nature 594 (7861), 77-81, 2021 | 54 | 2021 |
| Familial long-read sequencing increases yield of de novo mutations MD Noyes, WT Harvey, D Porubsky, A Sulovari, R Li, NR Rose, ... The American Journal of Human Genetics 109 (4), 631-646, 2022 | 40 | 2022 |
| imGLAD: accurate detection and quantification of target organisms in metagenomes JC Castro, LM Rodriguez-R, WT Harvey, MR Weigand, JK Hatt, MQ Carter, ... PeerJ 6, e5882, 2018 | 24 | 2018 |
| A fully phased accurate assembly of an individual human genome D Porubsky, P Ebert, PA Audano, MR Vollger, WT Harvey, KM Munson, ... bioRxiv, 855049, 2019 | 23 | 2019 |
| Assembly of 43 human Y chromosomes reveals extensive complexity and variation P Hallast, P Ebert, M Loftus, F Yilmaz, PA Audano, GA Logsdon, ... Nature 621 (7978), 355-364, 2023 | 19 | 2023 |
| Gaps and complex structurally variant loci in phased genome assemblies D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ... Genome research 33 (4), 496-510, 2023 | 18 | 2023 |
| Classifying prokaryotic genomes using the Microbial Genomes Atlas (MiGA) webserver LM Rodriguez‐R, WT Harvey, R Rosselló‐Mora, JM Tiedje, JR Cole, ... Bergey's Manual of Systematics of Archaea and Bacteria, 1-11, 2015 | 13 | 2015 |
| Inversion polymorphism in a complete human genome assembly D Porubsky, WT Harvey, AN Rozanski, J Ebler, W Höps, H Ashraf, ... Genome Biology 24 (1), 100, 2023 | 12 | 2023 |
| Haplotype-resolved inversion landscape reveals hotspots of mutational recurrence associated with genomic disorders D Porubsky, W Höps, H Ashraf, PH Hsieh, B Rodriguez-Martin, F Yilmaz, ... bioRxiv, 2021.12. 20.472354, 2021 | 9 | 2021 |
| Whole-genome long-read sequencing downsampling and its effect on variant-calling precision and recall WT Harvey, P Ebert, J Ebler, PA Audano, KM Munson, K Hoekzema, ... Genome Research 33 (12), 2029-2040, 2023 | 8 | 2023 |
