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Hamim Zafar
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Monovar: single-nucleotide variant detection in single cells
H Zafar, Y Wang, L Nakhleh, N Navin, K Chen
Nature methods 13 (6), 505-507, 2016
1702016
SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models
H Zafar, A Tzen, N Navin, K Chen, L Nakhleh
Genome biology 18 (1), 1-20, 2017
1542017
SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data
H Zafar, N Navin, K Chen, L Nakhleh
Genome research 29 (11), 1847-1859, 2019
1112019
Single-cell lineage tracing by integrating CRISPR-Cas9 mutations with transcriptomic data
H Zafar, C Lin, Z Bar-Joseph
Nature communications 11 (1), 3055, 2020
542020
Adaptive-differential-evolution-based design of two-channel quadrature mirror filter banks for sub-band coding and data transmission
P Ghosh, S Das, H Zafar
IEEE Transactions on Systems, Man, and Cybernetics, Part C (Applications and …, 2012
422012
A modified differential evolution algorithm for shaped beam linear array antenna design
A Mandal, H Zafar, S Das, AV Vasilakos
Progress In Electromagnetics Research 125, 439-457, 2012
402012
Computational approaches for inferring tumor evolution from single-cell genomic data
H Zafar, N Navin, L Nakhleh, K Chen
Current Opinion in Systems Biology 7, 16-25, 2018
372018
Matrilysin/MMP-7 cleavage of perlecan/HSPG2 complexed with semaphorin 3A supports FAK-mediated stromal invasion by prostate cancer cells
BJ Grindel, JR Martinez, TV Tellman, DA Harrington, H Zafar, L Nakhleh, ...
Scientific reports 8 (1), 7262, 2018
332018
Efficient circular array synthesis with a memetic differential evolution algorithm
A Mandal, H Zafar, S Das, AV Vasilakos
Progress in Electromagnetics Research 38, 367-385, 2012
222012
Dynamic economic dispatch using Lbest-PSO with dynamically varying sub-swarms
A Chowdhury, H Zafar, BK Panigrahi, KR Krishnanand, A Mohapatra, ...
Memetic Computing 6 (2), 85-95, 2014
172014
Hierarchical dynamic neighborhood based particle swarm optimization for global optimization
P Ghosh, H Zafar, S Das, A Abraham
2011 IEEE Congress of Evolutionary Computation (CEC), 757-764, 2011
162011
A Combinatorial Approach for Single-cell Variant Detection via Phylogenetic Inference
M Edrisi, H Zafar, L Nakhleh
19th International Workshop on Algorithms in Bioinformatics (WABI 2019) 143 …, 2019
132019
Inference of cell state transitions and cell fate plasticity from single-cell with MARGARET
K Pandey, H Zafar
Nucleic Acids Research 50 (15), 2022
112022
An efficient memetic algorithm for parameter tuning of PID controller in AVR system
A Mandal, H Zafar, P Ghosh, S Das, A Abraham
2011 11th International Conference on Hybrid Intelligent Systems (HIS), 265-270, 2011
82011
Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data
M Edrisi, M Valecha, S Chowdary, S Robledo, H Ogilvie, D Posada, ...
Bioinformatics 38 (Supplement_1), i195–i202, 2022
62022
Linear Array Geometry Synthesis with Minimum Side Lobe Level and Null Control Using Dynamic Multi-Swarm Particle Swarm Optimizer with Local Search
P Ghosh, H Zafar
International Conference on Swarm, Evolutionary, and Memetic Computing, 701-708, 2010
62010
Design of two-channel quadrature mirror filter banks using differential evolution with global and local neighborhoods
P Ghosh, H Zafar, J Banerjee, S Das
International Conference on Swarm, Evolutionary, and Memetic Computing, 1-10, 2011
42011
Charting spatial ligand-target activity using Renoir
N Rao, R Pai, A Mishra, F Ginhoux, J Chan, A Sharma, H Zafar
bioRxiv, 2023.04. 14.536833, 2023
32023
scDREAMER for atlas-level integration of single-cell datasets using deep generative model paired with adversarial classifier
A Shree, MK Pavan, H Zafar
Nature Communications 14 (1), 7781, 2023
22023
TruthBot: An Automated Conversational Tool for Intent Learning, Curated Information Presenting, and Fake News Alerting
A Gupta, Y Varun, P Das, N Muttineni, P Srivastava, H Zafar, ...
arXiv preprint arXiv:2102.00509, 2021
22021
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