| Mitigating site effects in covariance for machine learning in neuroimaging data AA Chen, JC Beer, NJ Tustison, PA Cook, RT Shinohara, H Shou, ... Human brain mapping 43 (4), 1179-1195, 2022 | 86* | 2022 |
| Pitfalls in brain age analyses ER Butler, A Chen, R Ramadan, TT Le, K Ruparel, TM Moore, ... Human Brain Mapping 42 (13), 4092-4101, 2021 | 67 | 2021 |
| Interpretable surface-based detection of focal cortical dysplasias: a Multi-centre Epilepsy Lesion Detection study H Spitzer, M Ripart, K Whitaker, F D’Arco, K Mankad, AA Chen, ... Brain 145 (11), 3859-3871, 2022 | 40 | 2022 |
| Site effects how-to & when: an overview of retrospective techniques to accommodate site effects in multi-site neuroimaging analyses JMM Bayer, P Thompson, CRK Ching, M Liu, A Chen, AC Panzenhagen, ... Frontiers in Neurology, 2022 | 40 | 2022 |
| Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization F Hu, AA Chen, H Horng, V Bashyam, C Davatzikos, A Alexander-Bloch, ... NeuroImage, 120125, 2023 | 32 | 2023 |
| First-generation clinical dual-source photon-counting CT: ultra-low-dose quantitative spectral imaging LP Liu, N Shapira, AA Chen, RT Shinohara, P Sahbaee, M Schnall, HI Litt, ... European radiology 32 (12), 8579-8587, 2022 | 31 | 2022 |
| Suboptimal phenotypic reliability impedes reproducible human neuroscience A Nikolaidis, AA Chen, X He, R Shinohara, J Vogelstein, M Milham, ... BioRxiv, 2022.07. 22.501193, 2022 | 28 | 2022 |
| Harmonizing functional connectivity reduces scanner effects in community detection AA Chen, D Srinivasan, R Pomponio, Y Fan, IM Nasrallah, SM Resnick, ... NeuroImage 256, 119198, 2022 | 25 | 2022 |
| Immune aging in multiple sclerosis is characterized by abnormal CD4 T cell activation and increased frequencies of cytotoxic CD4 T cells with advancing age L Zuroff, A Rezk, K Shinoda, DA Espinoza, Y Elyahu, B Zhang, AA Chen, ... EBioMedicine 82, 2022 | 22 | 2022 |
| Privacy-preserving harmonization via distributed ComBat AA Chen, C Luo, Y Chen, RT Shinohara, H Shou, ... NeuroImage 248, 118822, 2022 | 13 | 2022 |
| Personalized functional brain network topography is associated with individual differences in youth cognition AS Keller, AR Pines, S Shanmugan, VJ Sydnor, Z Cui, MA Bertolero, ... Nature communications 14 (1), 8411, 2023 | 5* | 2023 |
| Functional connectivity development along the sensorimotor-association axis enhances the cortical hierarchy AC Luo, VJ Sydnor, A Pines, B Larsen, AF Alexander-Bloch, M Cieslak, ... Nature Communications 15 (1), 3511, 2024 | 3 | 2024 |
| DeepComBat: A Statistically Motivated, Hyperparameter-Robust, Deep Learning Approach to Harmonization of Neuroimaging Data F Hu, A Lucas, AA Chen, K Coleman, H Horng, RWS Ng, NJ Tustison, ... bioRxiv, 2023 | 1 | 2023 |
| Learning longitudinal patterns and subtypes of pediatric Crohn disease treated with infliximab via trajectory cluster analysis A Chen, R Stein, RN Baldassano, J Huang Journal of pediatric gastroenterology and nutrition 74 (3), 383-388, 2022 | 1 | 2022 |
| Generalizable links between borderline personality traits and functional connectivity G Shafiei, AS Keller, M Bertolero, S Shanmugan, DS Bassett, AA Chen, ... Biological Psychiatry, 2024 | | 2024 |
| Similarity-based multimodal regression AA Chen, SM Weinstein, A Adebimpe, RC Gur, RE Gur, KR Merikangas, ... Biostatistics, kxad033, 2023 | | 2023 |
| Harmonization of multi-site diffusion tensor imaging data for cervical and thoracic spinal cord at 1.5 T and 3 T using longitudinal ComBat DM Middleton, Y Li, A Chen, R Shinohara, J Fisher, L Krisa, M Elliot, ... Scientific Reports 13 (1), 19809, 2023 | | 2023 |
| Deconfounded Dimension Reduction via Partial Embeddings AA Chen, K Clark, B Dewey, A DuVal, N Pellegrini, G Nair, Y Jalkh, ... bioRxiv, 2023 | | 2023 |
| Novel Methods for Statistical Analysis of Covariance Structures AA Chen University of Pennsylvania, 2023 | | 2023 |
| Robust Image Population Based Stain Color Normalization: How Many Reference Slides Are Enough? JL Agraz, CM Grenko, AA Chen, AN Viaene, MLD Nasrallah, S Pati, ... IEEE Open Journal of Engineering in Medicine and Biology 3, 218-226, 2022 | | 2022 |
