| CSA: an efficient algorithm to improve circular DNA multiple alignment F Fernandes, L Pereira, AT Freitas BMC bioinformatics 10, 1-13, 2009 | 56 | 2009 |
| Geometric detection algorithms for cavities on protein surfaces in molecular graphics: a survey T Simões, D Lopes, S Dias, F Fernandes, J Pereira, J Jorge, C Bajaj, ... Computer graphics forum 36 (8), 643-683, 2017 | 49 | 2017 |
| slaMEM: efficient retrieval of maximal exact matches using a sampled LCP array F Fernandes, AT Freitas Bioinformatics 30 (4), 464-471, 2014 | 22 | 2014 |
| Entropic Profiler–detection of conservation in genomes using information theory F Fernandes, AT Freitas, JS Almeida, S Vinga BMC research notes 2, 1-8, 2009 | 21 | 2009 |
| Effects of sliding window variation in the performance of acceleration-based human activity recognition using deep learning models M Jaén-Vargas, KMR Leiva, F Fernandes, SB Gonçalves, MT Silva, ... PeerJ Computer Science 8, e1052, 2022 | 20 | 2022 |
| Efficient alignment of pyrosequencing reads for re-sequencing applications F Fernandes, PGS da Fonseca, LMS Russo, AL Oliveira, AT Freitas BMC bioinformatics 12, 1-9, 2011 | 15 | 2011 |
| CavBench: A benchmark for protein cavity detection methods S Dias, T Simões, F Fernandes, AM Martins, A Ferreira, J Jorge, ... PLoS One 14 (10), e0223596, 2019 | 9 | 2019 |
| A Deep Learning Approach to Recognize Human Activity Using Inertial Sensors and Motion Capture Systems M Jaén-Vargas, KR Leiva, F Fernandes, SB Gonçalves, MT Silva, ... | 6* | 2021 |
| CSA-MEM: Enhancing Circular DNA Multiple Alignment Through Text Indexing Algorithms A Salgado, F Fernandes, AT Freitas International Symposium on Bioinformatics Research and Applications, 509-517, 2023 | 1 | 2023 |
| Sticks and STONES may build my bones: Deep learning reconstruction of limb rotations in stick figures F Fernandes, I Roupa, SB Gonçalves, G Moita, MT da Silva, J Pereira, ... Pattern Recognition Letters 165, 138-145, 2023 | 1 | 2023 |
| Detection of conserved regions in genomes using entropic profiles F Fernandes, AT Freitas, S Vinga INESC-ID Tec. Rep 33, 2007 | 1 | 2007 |
| Position Based Rigid Body Simulation: A comparison of physics simulators for games M Seabra, F Fernandes, D Lopes, J Madeiras Computer Science Research Notes - CSRN 3301, 2023 | | 2023 |
| SpliceTAPyR—An Efficient Method for Transcriptome Alignment AS Teixeira, F Fernandes, AP Francisco International Journal of Foundations of Computer Science 29 (08), 1297-1310, 2018 | | 2018 |
| PuzzleDock: An Immersive Protein Docking Environment F Fernandes, DS Lopes, J Santos, A Ferreira International Conference on Graphics and Interaction (ICGI2018), 2018 | | 2018 |
| An experimental shape matching approach for protein docking F Fernandes, A Ferreira Proceedings of the Eurographics 2016 Workshop on 3D Object Retrieval, 21-25, 2016 | | 2016 |
| Efficient method for transcriptome alignment AS Teixeira, AP Francisco, F Fernandes | | 2016 |
| Parallel efficient aligner of pyrosequencing reads ME Coimbra, F Fernandes, LMS Russo, AT Freitas Proceedings of the 20th European MPI Users' Group Meeting, 241-246, 2013 | | 2013 |
| TAPYR: An efficient high-throughput sequence aligner for re-sequencing applications F Fernandes, PGS da Fonseca, LMS Russo, AL Oliveira, AT Freitas Detailed Program, 10, 2011 | | 2011 |
| Efficient high-throughput read mapping for re-sequencing applications F Fernandes, PGS da Fonseca, LMS Russo, AL Oliveira, AT Freitas Detailed Program, 31, 2011 | | 2011 |
