| Integrated genomic and interfacility patient-transfer data reveal the transmission pathways of multidrug-resistant Klebsiella pneumoniae in a regional outbreak ES Snitkin, S Won, A Pirani, Z Lapp, RA Weinstein, K Lolans, MK Hayden Science translational medicine 9 (417), eaan0093, 2017 | 55 | 2017 |
| mikropml: user-friendly R package for supervised machine learning pipelines BD Topçuoğlu, Z Lapp, KL Sovacool, E Snitkin, J Wiens, PD Schloss Journal of open source software 6 (61), 2021 | 29 | 2021 |
| Whole-genome sequencing to identify drivers of carbapenem-resistant Klebsiella pneumoniae transmission within and between regional long-term acute-care hospitals JH Han, Z Lapp, F Bushman, E Lautenbach, EJC Goldstein, L Mattei, ... Antimicrobial agents and chemotherapy 63 (11), 10.1128/aac. 01622-19, 2019 | 29 | 2019 |
| Regional spread of blaNDM-1-containing Klebsiella pneumoniae ST147 in post-acute care facilities Z Lapp, R Crawford, A Miles-Jay, A Pirani, WE Trick, RA Weinstein, ... Clinical Infectious Diseases, 2021 | 25 | 2021 |
| Patient and microbial genomic factors associated with carbapenem-resistant klebsiella pneumoniae extraintestinal colonization and infection Z Lapp, JH Han, J Wiens, EJC Goldstein, E Lautenbach, ES Snitkin Msystems 6 (2), 10.1128/msystems. 00177-21, 2021 | 18* | 2021 |
| prewas: data pre-processing for more informative bacterial GWAS K Saund, Z Lapp, SN Thiede, A Pirani, ES Snitkin Microbial Genomics 6 (5), e000368, 2020 | 15 | 2020 |
| Application of Combined Genomic and Transfer Analyses to Identify Factors Mediating Regional Spread of Antibiotic-resistant Bacterial Lineages J Wang, B Foxman, A Pirani, Z Lapp, L Mody, ES Snitkin Clinical Infectious Diseases 71 (10), e642-e649, 2020 | 11 | 2020 |
| regentrans: a framework and R package for using genomics to study regional pathogen transmission S Hoffman, Z Lapp, J Wang, ES Snitkin Microbial Genomics 8 (1), 000747, 2022 | 5 | 2022 |
| Teaching Python for Data Science: Collaborative development of a modular & interactive curriculum M Duda, KL Sovacool, N Farzaneh, VK Nguyen, SE Haynes, H Falk, ... Journal of Open Source Education 4 (46), 138, 2021 | 5 | 2021 |
| Developing and deploying an integrated workshop curriculum teaching computational skills for reproducible research Z Lapp, KL Sovacool, N Lesniak, D King, C Barnier, M Flickinger, J Krüger, ... Journal of Open Source Education 5 (47), 144, 2022 | 3 | 2022 |
| Characterization of resistance to newer antimicrobials among carbapenem-resistant Klebsiella pneumoniae in the post–acute-care setting HL Zhang, KJ Gontjes, JH Han, K Alby, Z Lapp, E Snitkin, EJC Goldstein, ... Infection Control & Hospital Epidemiology 44 (7), 1159-1162, 2023 | 2 | 2023 |
| Plasmodium falciparum genetic diversity in coincident human and mosquito hosts Z Lapp, AA Obala, L Abel, DA Rasmussen, KM Sumner, E Freedman, ... Mbio 13 (5), e02277-22, 2022 | 2 | 2022 |
| Risk Factors for Colistin-Resistant Carbapenem-Resistant Klebsiella pneumoniae in the Postacute Care Setting HL Zhang, JH Han, Z Lapp, E Snitkin, EJC Goldstein, S Muldoon, ... Open Forum Infectious Diseases 9 (9), ofac452, 2022 | 2 | 2022 |
| Fitness barriers to spread of colistin resistance overcome by first establishing niche in patients with enhanced colistin exposure Z Lapp, JH Han, D Choudhary, S Castaneda, A Pirani, K Alby, ... medRxiv, 2021.06. 11.21258758, 2021 | 2* | 2021 |
| bistro: An R package for vector bloodmeal identification by short tandem repeat overlap Z Lapp, L Abel, J Mangeni, AA Obala, WP O'Meara, SM Taylor, ... Methods in Ecology and Evolution 15 (2), 308-316, 2024 | 1 | 2024 |
| Superinfection plays an important role in the acquisition of complex Plasmodium falciparum infections among female Anopheles mosquitoes S Bérubé, B Freedman, D Menya, J Kipkoech, L Abel, Z Lapp, SM Taylor, ... bioRxiv, 2022.12. 23.521802, 2022 | 1 | 2022 |
| Relationship between malaria vector survival, infectivity and insecticide treated net use in western Kenya L Abel, E Kimachas, E Omollo, E Nalianya, T Chepkwony, J Kipkoech, ... | | 2024 |
| Mosquito and human characteristics influence natural Anopheline biting behavior and Plasmodium falciparum transmission CF Markwalter, Z Lapp, L Abel, E Kimachas, E Omollo, E Freedman, ... medRxiv, 2024.01. 24.24301433, 2024 | | 2024 |
| Analytic optimization of Plasmodium falciparum marker gene haplotype recovery from amplicon deep sequencing of complex mixtures Z Lapp, E Freedman, K Huang, CF Markwalter, AA Obala, ... medRxiv, 2023 | | 2023 |
| Distinct Origins and Transmission Pathways of blaKPC Enterobacterales across Three U.S. States Z Lapp, R Octaria, SM O’Malley, TN Nguyen, H Wolford, R Crawford, ... Journal of Clinical Microbiology, e00259-23, 2023 | | 2023 |
