The differential short-and long-term effects of HIV-1 latency-reversing agents on T cell function G Clutton, Y Xu, PL Baldoni, KR Mollan, J Kirchherr, W Newhard, K Cox, ... Scientific reports 6 (1), 30749, 2016 | 83 | 2016 |
Incidence of hypertension among US Hispanics/Latinos: the Hispanic community health study/study of Latinos, 2008 to 2017 T Elfassy, A Zeki Al Hazzouri, J Cai, PL Baldoni, MM Llabre, T Rundek, ... Journal of the American Heart Association 9 (12), e015031, 2020 | 48 | 2020 |
edgeR: differential analysis of sequence read count data User’s Guide Y Chen, D McCarthy, M Ritchie, M Robinson, G Smyth, E Hall R Packag, 1-121, 2020 | 40 | 2020 |
Current smoking raises risk of incident hypertension: Hispanic Community Health Study–Study of Latinos RC Kaplan, PL Baldoni, GM Strizich, EJ Pérez-Stable, NL Saccone, ... American journal of hypertension 34 (2), 190-197, 2021 | 31 | 2021 |
Quantification of the latent HIV-1 reservoir using ultra deep sequencing and primer ID in a viral outgrowth assay SK Lee, S Zhou, PL Baldoni, E Spielvogel, NM Archin, MG Hudgens, ... JAIDS Journal of Acquired Immune Deficiency Syndromes 74 (2), 221-228, 2017 | 31 | 2017 |
SLDAssay: a software package and web tool for analyzing limiting dilution assays IM Trumble, AG Allmon, NM Archin, J Rigdon, O Francis, PL Baldoni, ... Journal of immunological methods 450, 10-16, 2017 | 27 | 2017 |
Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures X Dong, MRM Du, Q Gouil, L Tian, JS Jabbari, R Bowden, PL Baldoni, ... Nature Methods 20 (11), 1810-1821, 2023 | 25 | 2023 |
Precise and accurate power of the rank-sum test for a continuous outcome KR Mollan, IM Trumble, SA Reifeis, O Ferrer, CP Bay, PL Baldoni, ... Journal of biopharmaceutical statistics 30 (4), 639-648, 2020 | 18 | 2020 |
Exact power of the rank-sum test for a continuous variable KR Mollan, IM Trumble, SA Reifeis, O Ferrer, CP Bay, PL Baldoni, ... arXiv preprint arXiv:1901.04597, 2019 | 14 | 2019 |
On the use of regression calibration in a complex sampling design with application to the Hispanic Community Health Study/Study of Latinos PL Baldoni, D Sotres-Alvarez, T Lumley, PA Shaw American journal of epidemiology 190 (7), 1366-1376, 2021 | 13 | 2021 |
Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR PL Baldoni, Y Chen, S Hediyeh-zadeh, Y Liao, X Dong, ME Ritchie, W Shi, ... Nucleic Acids Research 52 (3), e13, 2024 | 7 | 2024 |
Differential requirement for the Polycomb repressor complex 2 in dendritic cell and tissue-resident myeloid cell homeostasis Y Zhan, Y Zhang, S Zhang, H Coughlan, PL Baldoni, N Jacquelot, ... Science Immunology 6 (63), eabf7268, 2021 | 6 | 2021 |
Comparisons of statistical methods for handling attrition in a follow‐up visit with complex survey sampling J Cai, D Zeng, H Li, NM Butera, PL Baldoni, P Maitra, L Dong Statistics in Medicine, 2023 | 2 | 2023 |
Cumulative All-Cause Mortality in Diverse Hispanic/Latino Adults: A Prospective, Multicenter Cohort Study J Cai, A Pirzada, PL Baldoni, G Heiss, J Kunz, WD Rosamond, ... Annals of internal medicine 177 (3), 303-314, 2024 | 1 | 2024 |
edgeR 4.0: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets Y Chen, L Chen, ATL Lun, PL Baldoni, GK Smyth bioRxiv, 2024.01. 21.576131, 2024 | 1 | 2024 |
Improved detection of epigenomic marks with mixed-effects hidden Markov models PL Baldoni, NU Rashid, JG Ibrahim Biometrics 75 (4), 1401-1413, 2019 | 1 | 2019 |
Quantifying the HIV reservoir with dilution assays and deep viral sequencing SC Lotspeich, BD Richardson, PL Baldoni, KP Enders, MG Hudgens Biometrics 80 (1), ujad018, 2024 | | 2024 |
MORC2 phosphorylation fine tunes its DNA compaction activity W Tan, JV Park, H Venugopal, JQ Lou, PS Dias, P Baldoni, T Dite, ... bioRxiv, 2024.06. 27.600912, 2024 | | 2024 |
Faster and more accurate assessment of differential transcript expression with Gibbs sampling and edgeR 4.0 PL Baldoni, L Chen, GK Smyth bioRxiv, 2024.06. 25.600555, 2024 | | 2024 |
Efficient detection and classification of epigenomic changes under multiple conditions PL Baldoni, NU Rashid, JG Ibrahim Biometrics 78, 1141-1154, 2022 | | 2022 |