| Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks X Guo, L Gao, Q Liao, H Xiao, X Ma, X Yang, H Luo, G Zhao, D Bu, F Jiao, ... Nucleic acids research 41 (2), e35-e35, 2013 | 198 | 2013 |
| Semi-supervised clustering algorithm for community structure detection in complex networks X Ma, L Gao, X Yong, L Fu Physica A: Statistical Mechanics and its Applications 389 (1), 187-197, 2010 | 170 | 2010 |
| Evolutionary nonnegative matrix factorization algorithms for community detection in dynamic networks X Ma, D Dong IEEE transactions on knowledge and data engineering 29 (5), 1045-1058, 2017 | 153 | 2017 |
| Community detection in multi-layer networks using joint nonnegative matrix factorization X Ma, D Dong, Q Wang IEEE Transactions on Knowledge and Data Engineering 31 (2), 273-286, 2018 | 139 | 2018 |
| Graph regularized nonnegative matrix factorization for temporal link prediction in dynamic networks X Ma, P Sun, Y Wang Physica A: Statistical mechanics and its applications 496, 121-136, 2018 | 100 | 2018 |
| Nonnegative matrix factorization algorithms for link prediction in temporal networks using graph communicability X Ma, P Sun, G Qin Pattern Recognition 71, 361-374, 2017 | 97 | 2017 |
| Biological network analysis: insights into structure and functions X Ma, L Gao Briefings in functional genomics 11 (6), 434-442, 2012 | 80 | 2012 |
| Multiple network algorithm for epigenetic modules via the integration of genome-wide DNA methylation and gene expression data X Ma, Z Liu, Z Zhang, X Huang, W Tang BMC bioinformatics 18, 1-13, 2017 | 69 | 2017 |
| Modeling disease progression using dynamics of pathway connectivity X Ma, L Gao, K Tan Bioinformatics 30 (16), 2343-2350, 2014 | 68 | 2014 |
| Identifying noncoding risk variants using disease-relevant gene regulatory networks L Gao, Y Uzun, P Gao, B He, X Ma, J Wang, S Han, K Tan Nature communications 9 (1), 702, 2018 | 59 | 2018 |
| Predicting protein complexes in protein interaction networks using a core-attachment algorithm based on graph communicability X Ma, L Gao Information Sciences 189, 233-254, 2012 | 56 | 2012 |
| Revealing pathway dynamics in heart diseases by analyzing multiple differential networks X Ma, L Gao, G Karamanlidis, P Gao, CF Lee, L Garcia-Menendez, R Tian, ... PLoS Computational Biology 11 (6), e1004332, 2015 | 51 | 2015 |
| Prediction of new drug indications based on clinical data and network modularity L Yu, X Ma, L Zhang, J Zhang, L Gao Scientific reports 6 (1), 32530, 2016 | 44 | 2016 |
| Dynamic module detection in temporal attributed networks of cancers D Li, S Zhang, X Ma IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (4 …, 2021 | 40 | 2021 |
| Dynamic community detection based on network structural perturbation and topological similarity P Wang, L Gao, X Ma Journal of Statistical Mechanics: Theory and Experiment 2017 (1), 013401, 2017 | 39 | 2017 |
| Multi-view clustering with self-representation and structural constraint X Gao, X Ma, W Zhang, J Huang, H Li, Y Li, J Cui IEEE transactions on big data 8 (4), 882-893, 2021 | 37 | 2021 |
| Prostaglandin E1 and its analog misoprostol inhibit human CML stem cell self-renewal via EP4 receptor activation and repression of AP-1 F Li, B He, X Ma, S Yu, RR Bhave, SR Lentz, K Tan, ML Guzman, C Zhao, ... Cell Stem Cell 21 (3), 359-373. e5, 2017 | 37 | 2017 |
| An integrative framework for protein interaction network and methylation data to discover epigenetic modules X Ma, P Sun, ZY Zhang IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (6 …, 2018 | 34 | 2018 |
| Semi-supervised spectral algorithms for community detection in complex networks based on equivalence of clustering methods X Ma, B Wang, L Yu Physica A: Statistical Mechanics and its Applications 490, 786-802, 2018 | 34 | 2018 |
| The extraction of drug-disease correlations based on module distance in incomplete human interactome L Yu, B Wang, X Ma, L Gao BMC Systems biology 10, 531-539, 2016 | 32 | 2016 |
