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Neil Thomas
Neil Thomas
Research Scientist, [Google] X
Verified email at berkeley.edu - Homepage
Title
Cited by
Cited by
Year
Evaluating protein transfer learning with TAPE
R Rao, N Bhattacharya, N Thomas, Y Duan, P Chen, J Canny, P Abbeel, ...
Advances in neural information processing systems 32, 2019
7592019
Whole-genome sequencing reveals a complex African population demographic history and signatures of local adaptation
S Fan, JP Spence, Y Feng, MEB Hansen, J Terhorst, MH Beltrame, ...
Cell 186 (5), 923-939. e14, 2023
362023
Single layers of attention suffice to predict protein contacts
N Bhattacharya, N Thomas, R Rao, J Dauparas, PK Koo, D Baker, ...
Biorxiv, 2020.12. 21.423882, 2020
36*2020
End-to-end learning of multiple sequence alignments with differentiable Smith–Waterman
S Petti, N Bhattacharya, R Rao, J Dauparas, N Thomas, J Zhou, AM Rush, ...
Bioinformatics 39 (1), btac724, 2023
242023
Functional genomics of OCTN2 variants informs protein-specific variant effect predictor for Carnitine Transporter Deficiency
ML Koleske, G McInnes, JEH Brown, N Thomas, K Hutchinson, MY Chin, ...
Proceedings of the National Academy of Sciences 119 (46), e2210247119, 2022
82022
On a finite branch and bound algorithm for the global minimization of a concave power law over a polytope
VI Manousiouthakis, N Thomas, AM Justanieah
Journal of optimization theory and applications 151, 121-134, 2011
62011
Tuned Fitness Landscapes for Benchmarking Model-Guided Protein Design
N Thomas, A Agarwala, D Belanger, YS Song, LJ Colwell
bioRxiv, 2022.10. 28.514293, 2022
42022
Minding the gaps: The importance of navigating holes in protein fitness landscapes
N Thomas, LJ Colwell
Cell Systems 12 (11), 1019-1020, 2021
22021
Engineering highly active and diverse nuclease enzymes by combining machine learning and ultra-high-throughput screening
N Thomas, D Belanger, C Xu, H Lee, K Hirano, K Iwai, V Polic, KD Nyberg, ...
bioRxiv, 2024.03. 21.585615, 2024
2024
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