| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1165 | 2020 |
| atSNP: transcription factor binding affinity testing for regulatory SNP detection C Zuo, S Shin, S Keleş Bioinformatics 31 (20), 3353-3355, 2015 | 100 | 2015 |
| Perspectives on ENCODE MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ... Nature 583 (7818), 693-698, 2020 | 92 | 2020 |
| Predicting gene expression in massively parallel reporter assays: a comparative study A Kreimer, H Zeng, MD Edwards, Y Guo, K Tian, S Shin, R Welch, ... Human mutation 38 (9), 1240-1250, 2017 | 50 | 2017 |
| atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding S Shin, R Hudson, C Harrison, M Craven, S Keleş Bioinformatics 35 (15), 2657-2659, 2019 | 29 | 2019 |
| Identification of direct transcriptional targets of NFATC2 that promote β cell proliferation SP Simonett, S Shin, JA Herring, R Bacher, LA Smith, C Dong, ... The Journal of Clinical Investigation 131 (21), 2021 | 16 | 2021 |
| Ultra-widefield fundus autofluorescence in age-related macular degeneration A Guduru, D Fleischman, S Shin, D Zeng, JB Baldwin, OM Houghton, ... PloS one 12 (6), e0177207, 2017 | 16 | 2017 |
| Adaptive estimation with partially overlapping models S Shin, J Fine, Y Liu Statistica Sinica 26 (1), 235, 2016 | 8 | 2016 |
| INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants C Dong, SP Simonett, S Shin, DS Stapleton, KL Schueler, GA Churchill, ... Genome biology 22, 1-32, 2021 | 5 | 2021 |
| Annotation Regression for Genome-Wide Association Studies with an Application to Psychiatric Genomic Consortium Data S Shin, S Keleş Statistics in biosciences 9, 50-72, 2017 | 4 | 2017 |
| Iteratively Reweighted Group Lasso Based on Log-Composite Regularization C Ke, M Ahn, S Shin, Y Lou SIAM Journal on Scientific Computing 43 (5), S655-S678, 2021 | 3 | 2021 |
| CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods N Null, S Jain, C Bakolitsa, SE Brenner, P Radivojac, J Moult, S Repo, ... Genome Biology 25 (1), 1-46, 2024 | 2 | 2024 |
| atSNPInfrastructure, a case study for searching billions of records while providing significant cost savings over cloud providers C Harrison, S Keles, R Hudson, S Shin, I Dutra 2018 IEEE International Parallel and Distributed Processing Symposium …, 2018 | 2 | 2018 |
| Ensemble estimation and variable selection with semiparametric regression models S Shin, Y Liu, SR Cole, JP Fine Biometrika 107 (2), 433-448, 2020 | 1 | 2020 |
| Critical assessment of genome interpretation consortium. CAGI, the critical assessment of genome interpretation, establishes progress and pprospects for computational genetic … S Jain, C Bakolitsa, EB Steven, P Radivojac, J Moult, S Repo, AH Roger, ... Genome Biology 22 (22; 25 (1): 53.), 1-46, 2024 | | 2024 |
| A Generalized Formulation for Group Selection via ADMM C Ke, S Shin, Y Lou, M Ahn | | |
