| Reconstructing aspects of human embryogenesis with pluripotent stem cells B Sozen, V Jorgensen, B Weatherbee, S Chen, M Zhu, M Zernicka-Goetz Nature Communications, 2021 | 126 | 2021 |
| Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins J Gehring, JH Park, S Chen, M Thomson, L Pachter Nature Biotechnology 38 (1), 35-38, 2020 | 125* | 2020 |
| Interrogating cellular fate decisions with high-throughput arrays of multiplexed cellular communities S Chen, AW Bremer, OJ Scheideler, YS Na, ME Todhunter, S Hsiao, ... Nature communications 7 (1), 10309, 2016 | 54 | 2016 |
| Deep parallel characterization of AAV tropism and AAV-mediated transcriptional changes via single-cell RNA sequencing D Brown, M Altermatt, T Dobreva, S Chen, A Wang, M Thomson, ... Frontiers in immunology 12, 730825, 2021 | 42 | 2021 |
| Non-invasive microfluidic gap junction assay S Chen, LP Lee Integrative biology 2 (2-3), 130-138, 2010 | 31 | 2010 |
| Dissecting heterogeneous cell populations across drug and disease conditions with PopAlign S Chen, P Rivaud, JH Park, T Tsou, E Charles, JR Haliburton, F Pichiorri, ... Proceedings of the National Academy of Sciences 117 (46), 28784-28794, 2020 | 26 | 2020 |
| Integrated measurement of intracellular proteins and transcripts in single cells AM Xu, Q Liu, KL Takata, S Jeoung, Y Su, I Antoshechkin, S Chen, ... Lab on a Chip 18 (21), 3251-3262, 2018 | 17 | 2018 |
| Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic references AH Pool, H Poldsam, S Chen, M Thomson, Y Oka Nature methods 20 (10), 1506-1515, 2023 | 8 | 2023 |
| Minimal gene set discovery in single-cell mRNA-seq datasets with ActiveSVM X Chen, S Chen, M Thomson Nature Computational Science 2 (6), 387-398, 2022 | 8 | 2022 |
| Enhanced recovery of single-cell RNA-sequencing reads for missing gene expression data AH Pool, H Poldsam, S Chen, M Thomson, Y Oka BioRxiv, 2022.04. 26.489449, 2022 | 6 | 2022 |
| Dissecting heterogeneous cell-populations across signaling and disease conditions with PopAlign S Chen, JH Park, P Rivaud, E Charles, J Haliburton, F Pichiorri, ... bioRxiv 421354, 2018 | 5 | 2018 |
| Trap and corral: a two-step approach for constructing and constraining dynamic cell contact events in differentiating progenitor cell populations S Chen, N Patel, D Schaffer, MM Maharbiz Journal of Micromechanics and Microengineering 21 (5), 054027, 2011 | 4 | 2011 |
| D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response J Jiang, S Chen, T Tsou, CS McGinnis, T Khazaei, Q Zhu, JH Park, ... bioRxiv, 2023 | 1 | 2023 |
| Active feature selection discovers minimal gene sets for classifying cell types and disease states with single-cell mRNA-seq data X Chen, S Chen, M Thomson arXiv preprint arXiv:2106.08317, 2021 | 1 | 2021 |
| Systems and methods for dissecting heterogeneous cell populations MW Thomson, S Chen, P Rivaud US Patent App. 16/574,108, 2020 | 1 | 2020 |
| Newborn neuroblasts feel the field in the adult brain S Chen, DV Schaffer EMBO reports 14 (2), 105-106, 2013 | 1 | 2013 |
| Sample multiplexing for single-cell RNA sequencing J Gehring, LS Pachter, S Chen, JH Park US Patent 11,492,610, 2022 | | 2022 |
| Therapeutic algebra of immunomodulatory drug responses at single-cell resolution J Jiang, S Chen, T Tsou, CS McGinnis, T Khazaei, Q Zhu, JH Park, ... arXiv preprint arXiv:2208.10661, 2022 | | 2022 |
| AAV Tropism and AAV-Mediated Transcriptional Changes via Single-Cell RNA Sequencing D Brown, M Altermatt, T Dobreva, S Chen, A Wang, M Thomson, ... AAV Gene Therapy: Immunology and Immunotherapeutics, 2022 | | 2022 |
| Designing signaling environments to steer transcriptional diversity in neural progenitor cell populations S Chen, JH Park, J Jiang, T Tsou, P Rivaud, M Thomson bioRxiv, 2019.12. 30.890087, 2019 | | 2019 |
