| Identification of cross-linked peptides from complex samples B Yang, YJ Wu, M Zhu, SB Fan, J Lin, K Zhang, S Li, H Chi, YX Li, ... Nature methods 9 (9), 904-906, 2012 | 590 | 2012 |
| A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides ZL Chen, JM Meng, Y Cao, JL Yin, RQ Fang, SB Fan, C Liu, WF Zeng, ... Nature communications 10 (1), 3404, 2019 | 352 | 2019 |
| Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine H Chi, C Liu, H Yang, WF Zeng, L Wu, WJ Zhou, RM Wang, XN Niu, ... Nature biotechnology 36 (11), 1059-1061, 2018 | 289 | 2018 |
| pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification MQ Liu, WF Zeng, P Fang, WQ Cao, C Liu, GQ Yan, Y Zhang, C Peng, ... Nature communications 8 (1), 438, 2017 | 274 | 2017 |
| pDeep: predicting MS/MS spectra of peptides with deep learning XX Zhou, WF Zeng, H Chi, C Luo, C Liu, J Zhan, SM He, Z Zhang Analytical chemistry 89 (23), 12690-12697, 2017 | 206 | 2017 |
| pNovo: De novo Peptide Sequencing and Identification Using HCD Spectra H Chi, RX Sun, B Yang, CQ Song, LH Wang, C Liu, Y Fu, ZF Yuan, ... Journal of proteome research 9 (5), 2713-2724, 2010 | 185 | 2010 |
| A Strategy for Precise and Large Scale Identification of Core Fucosylated Glycoproteins* S W Jia, Z Lu, Y Fu, HP Wang, LH Wang, H Chi, ZF Yuan, ZB Zheng, ... Molecular & Cellular Proteomics 8 (5), 913-923, 2009 | 106 | 2009 |
| pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra H Chi, H Chen, K He, L Wu, B Yang, RX Sun, J Liu, WF Zeng, CQ Song, ... Journal of proteome research 12 (2), 615-625, 2013 | 103 | 2013 |
| pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD-and CID-MS/MS and MS3 WF Zeng, MQ Liu, Y Zhang, JQ Wu, P Fang, C Peng, A Nie, G Yan, W Cao, ... Scientific reports 6 (1), 25102, 2016 | 101 | 2016 |
| Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate D Ye, Y Fu, RX Sun, HP Wang, ZF Yuan, H Chi, SM He Bioinformatics 26 (12), i399-i406, 2010 | 91 | 2010 |
| MS/MS spectrum prediction for modified peptides using pDeep2 trained by transfer learning WF Zeng, XX Zhou, WJ Zhou, H Chi, J Zhan, SM He Analytical chemistry 91 (15), 9724-9731, 2019 | 83 | 2019 |
| pQuant improves quantitation by keeping out interfering signals and evaluating the accuracy of calculated ratios C Liu, CQ Song, ZF Yuan, Y Fu, H Chi, LH Wang, SB Fan, K Zhang, ... Analytical chemistry 86 (11), 5286-5294, 2014 | 77 | 2014 |
| pFind–Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data H Chi, K He, B Yang, Z Chen, RX Sun, SB Fan, K Zhang, C Liu, ZF Yuan, ... Journal of proteomics 125, 89-97, 2015 | 72 | 2015 |
| pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework H Yang, H Chi, WF Zeng, WJ Zhou, SM He Bioinformatics 35 (14), i183-i190, 2019 | 69 | 2019 |
| pParse: A method for accurate determination of monoisotopic peaks in high‐resolution mass spectra ZF Yuan, C Liu, HP Wang, RX Sun, Y Fu, JF Zhang, LH Wang, H Chi, Y Li, ... Proteomics 12 (2), 226-235, 2012 | 68 | 2012 |
| pTop 1.0: a high-accuracy and high-efficiency search engine for intact protein identification RX Sun, L Luo, L Wu, RM Wang, WF Zeng, H Chi, C Liu, SM He Analytical chemistry 88 (6), 3082-3090, 2016 | 63 | 2016 |
| Nematode sperm maturation triggered by protease involves sperm-secreted serine protease inhibitor (Serpin) Y Zhao, W Sun, P Zhang, H Chi, MJ Zhang, CQ Song, X Ma, Y Shang, ... Proceedings of the National Academy of Sciences 109 (5), 1542-1547, 2012 | 62 | 2012 |
| Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra RX Sun, MQ Dong, CQ Song, H Chi, B Yang, LY Xiu, L Tao, ZY Jing, C Liu, ... Journal of Proteome Research 9 (12), 6354-6367, 2010 | 44 | 2010 |
| Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing Y Li, H Chi, LH Wang, HP Wang, Y Fu, ZF Yuan, SJ Li, YS Liu, RX Sun, ... Rapid Communications in Mass Spectrometry 24 (6), 807-814, 2010 | 42 | 2010 |
| Open-pNovo: de novo peptide sequencing with thousands of protein modifications H Yang, H Chi, WJ Zhou, WF Zeng, K He, C Liu, RX Sun, SM He Journal of proteome research 16 (2), 645-654, 2017 | 39 | 2017 |
Meng-Qiu DongNational Institute of Biological Sciences, Beijing在 nibs.ac.cn 的电子邮件经过验证
