John Zobolas

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Martin KuiperProfessor in Systems Biology, NTNU, NorwayVerified email at ntnu.no
Vasundra TouréScientific CoordinatorVerified email at sib.swiss
Steven VercruysseComputer & Life Scientist, Senior Software Engineer, Dr. – Affiliate Researcher, NTNUVerified email at ntnu.no
Åsmund FlobakMD, MSc, PhD-Fellow, Norwegian University of Science and TechnologyVerified email at ntnu.no
Sandra OrchardProtein Function Content Team Leader, EMBL-EBIVerified email at ebi.ac.uk
Pablo Porras MillánEMBL-EBIVerified email at ebi.ac.uk
Marcio Luis AcencioPostdoctoral Fellow at the Luxembourg Centre for Systems Biomedicine, University of LuxembourgVerified email at uni.lu
Henning HermjakobHead of Molecular Systems, European Bioinformatics Institute (EMBL-EBI)Verified email at ebi.ac.uk
Ruth LoveringUniversity College LondonVerified email at ucl.ac.uk
Dávid FazekasDepartment of Genetics, Eötvös Loránd UniversityVerified email at netbiol.elte.hu
Livia PerfettoUniversità di Roma La SapienzaVerified email at uniroma1.it
Maria K. AndersenPost Doc, Norwegian University of Science and TechnologyVerified email at ntnu.no

John Zobolas

UiO

Verified email at medisin.uio.no - Homepage

Computational Systems Medicine


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CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination L Perfetto, ML Acencio, G Bradley, G Cesareni, N Del Toro, D Fazekas, ... Bioinformatics 35 (19), 3779-3785, 2019	31	2019
Boolean function metrics can assist modelers to check and choose logical rules J Zobolas, PT Monteiro, M Kuiper, Å Flobak Journal of Theoretical Biology, 111025, 2022	7	2022
CausalBuilder: bringing the MI2CAST causal interaction annotation standard to the curator V Touré, J Zobolas, M Kuiper, S Vercruysse Database 2021, baaa107, 2021	7	2021
VSM-box: general-purpose interface for biocuration and knowledge representation S Vercruysse, J Zobolas, V Touré, MK Andersen, M Kuiper Preprints, 2020	6	2020
UniBioDicts: Unified access to biological dictionaries J Zobolas, V Touré, M Kuiper, S Vercruysse Bioinformatics 37 (1), 143-144, 2020	5	2020
IIb‐RAD‐sequencing coupled with random forest classification indicates regional population structuring and sex‐specific differentiation in salmon lice (Lepeophtheirus salmonis) P Guragain, AS Båtnes, J Zobolas, Y Olsen, AM Bones, P Winge Ecology and Evolution 12 (4), e8809, 2022	4	2022
Fine tuning a logical model of cancer cells to predict drug synergies: combining manual curation and automated parameterization Å Flobak, J Zobolas, M Vazquez, TS Steigedal, L Thommesen, ... Frontiers in Systems Biology 3, 1252961, 2023	2*	2023
emba: R package for analysis and visualization of biomarkers in boolean model ensembles J Zobolas, M Kuiper, Å Flobak Journal of open source software 5 (53), 2583, 2020	2	2020
Tutorial on survival modeling with applications to omics data Z Zhao, J Zobolas, M Zucknick, T Aittokallio Bioinformatics, btae132, 2024	1*	2024
Linking PubDictionaries with UniBioDicts to support Community Curation J Zobolas, JD Kim, M Kuiper, S Vercruysse BioHackrXiv, 2020	1	2020
Survival modeling in mlr3 using Bayesian Additive Regression Trees (BART) Demonstrate use of survival BART on the lung dataset via mlr3proba and distr6. J Zobolas		2023
Software implementations allowing new approaches toward data analysis, modeling and curation of biological knowledge for Systems Medicine J Zobolas NTNU, 2021		2021

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