| Computational models with thermodynamic and composition features improve siRNA design SA Shabalina, AN Spiridonov, AY Ogurtsov BMC bioinformatics 7, 1-16, 2006 | 200 | 2006 |
| Congruent evolution of different classes of non‐coding DNA in prokaryotic genomes IB Rogozin, KS Makarova, DA Natale, AN Spiridonov, RL Tatusov, YI Wolf, ... Nucleic acids research 30 (19), 4264-4271, 2002 | 147 | 2002 |
| Distinct patterns of expression and evolution of intronless and intron-containing mammalian genes SA Shabalina, AY Ogurtsov, AN Spiridonov, PS Novichkov, ... Molecular biology and evolution 27 (8), 1745-1749, 2010 | 141 | 2010 |
| Purifying and directional selection in overlapping prokaryotic genes IB Rogozin, AN Spiridonov, AV Sorokin, YI Wolf, IK Jordan, RL Tatusov, ... Trends in Genetics 18 (5), 228-232, 2002 | 130 | 2002 |
| Identification of sequence motifs in oligonucleotides whose presence is correlated with antisense activity OV Matveeva, AD Tsodikov, M Giddings, SM Freier, JR Wyatt, ... Nucleic Acids Research 28 (15), 2862-2865, 2000 | 108 | 2000 |
| Low enzymatic activity haplotypes of the human catechol-O-methyltransferase gene: enrichment for marker SNPs AG Nackley, SA Shabalina, JE Lambert, MS Conrad, DG Gibson, ... PloS one 4 (4), e5237, 2009 | 60 | 2009 |
| Low enzymatic activity haplotypes of the human catechol-O-methyltransferase gene: enrichment for marker SNPs AG Nackley, SA Shabalina, JE Lambert, MS Conrad, DG Gibson, ... PloS one 4 (4), e5237, 2009 | 60 | 2009 |
| Optimization of duplex stability and terminal asymmetry for shRNA design OV Matveeva, Y Kang, AN Spiridonov, P Sætrom, VA Nemtsov, ... PloS one 5 (4), e10180, 2010 | 49 | 2010 |
| Connections between alternative transcription and alternative splicing in mammals SA Shabalina, AN Spiridonov, NA Spiridonov, EV Koonin Genome biology and evolution 2, 791-799, 2010 | 44 | 2010 |
| Exposing memory access regularities using object-relative memory profiling Q Wu, A Pyatakov, A Spiridonov, E Raman, DW Clark, DI August International Symposium on Code Generation and Optimization, 2004. CGO 2004 …, 2004 | 33 | 2004 |
| Pattern-Avoidance in Binary Fillings of Grid Shapes (short version) A Spiridonov Discrete Mathematics and Theoretical Computer Science, 677-690, 2008 | 11* | 2008 |
| Pattern-avoidance in binary fillings of grid shapes A Spiridonov Massachusetts Institute of Technology, 2009 | 6 | 2009 |
| Spectra of sparse graphs and matrices A Spiridonov Department of Mathematics, 2004 | 6 | 2004 |
| The Parallel Rigidity Index Of A Graph A Postnikov, A Spiridonov preprint, 2008 | 3 | 2008 |
| Optimization of Duplex Stability and Terminal Asymmetry for shRNA OV Matveeva, Y Kang, AN Spiridonov, P Sætrom, VA Nemtsov | | 2010 |
| Some results concerning sparse Erdős-Rényi graph adjacency spectra A Spiridonov preprint, 2006 | | 2006 |
| Dean Hoffman's 27-block-packing puzzle for the arithmetic-geometric mean inequality A Spiridonov Princeton Junior Independent Work, 2003 | | 2003 |
| Maximal-girth graphs. Self-dual and self-complementary graphs on the plane and torus. A Spiridonov Princeton Junior Independent Work, 2002 | | 2002 |
