| Protein sequence and structure co-design with equivariant translation C Shi, C Wang, J Lu, B Zhong, J Tang International Conference on Learning Representations (ICLR 2023), 2023 | 35 | 2023 |
| ParaFold: paralleling AlphaFold for large-scale predictions B Zhong, X Su, M Wen, S Zuo, L Hong, J Lin International Conference on High Performance Computing in Asia-Pacific …, 2022 | 30 | 2022 |
| Mechanism of zinc ejection by disulfiram in nonstructural protein 5A AU Rehman, G Zhen, B Zhong, D Ni, J Li, A Nasir, MT Gabr, H Rafiq, ... Physical Chemistry Chemical Physics 23 (21), 12204-12215, 2021 | 24 | 2021 |
| E3bind: An end-to-end equivariant network for protein-ligand docking Y Zhang, H Cai, C Shi, B Zhong, J Tang arXiv preprint arXiv:2210.06069, 2022 | 22 | 2022 |
| DiffPack: A torsional diffusion model for autoregressive protein side-chain packing Y Zhang, Z Zhang, B Zhong, S Misra, J Tang Advances in Neural Information Processing Systems (NeurIPS 2023), 2023 | 10 | 2023 |
| Proteome-wide 3D structure prediction provides insights into the ancestral metabolism of ancient archaea and bacteria W Zhao, B Zhong, L Zheng, P Tan, Y Wang, H Leng, N de Souza, Z Liu, ... Nature Communications 13 (1), 7861, 2022 | 6 | 2022 |
| Score-based Enhanced Sampling for Protein Molecular Dynamics J Lu, B Zhong, J Tang ICML 2023 Workshop on Structured Probabilistic Inference & Generative Modeling, 2023 | 4 | 2023 |
| Phosphorylation modification force field FB18CMAP improving conformation sampling of phosphoproteins G Song, B Zhong, B Zhang, AU Rehman, HF Chen Journal of Chemical Information and Modeling 63 (5), 1602-1614, 2023 | 4 | 2023 |
| Balanced Force Field ff03CMAP Improving the Dynamics Conformation Sampling of Phosphorylation Site B Zhong, G Song, HF Chen International Journal of Molecular Sciences 23 (19), 11285, 2022 | 4 | 2022 |
| Str2Str: A score-based framework for zero-shot protein conformation sampling J Lu, B Zhong, Z Zhang, J Tang International Conference on Learning Representations (ICLR 2024), 2023 | 3 | 2023 |
| Catalytic properties and biological function of a PIWI-RE nuclease from Pseudomonas stutzeri F Huang, X Xu, H Dong, N Li, B Zhong, H Lu, Q Liu, Y Feng Bioresources and Bioprocessing 9 (1), 57, 2022 | 3 | 2022 |
| PDB-Struct: A Comprehensive Benchmark for Structure-based Protein Design C Wang, B Zhong, Z Zhang, N Chaudhary, S Misra, J Tang NeurIPS 2023 Workshop on New Frontiers of AI for Drug Discovery and Development, 2023 | 2 | 2023 |
| Mn 2+-induced structural flexibility enhances the entire catalytic cycle and the cleavage of mismatches in prokaryotic argonaute proteins L Zheng, B Zhou, Y Yang, B Zan, B Zhong, B Wu, Y Feng, Q Liu, L Hong Chemical Science, 2024 | 1 | 2024 |
| Pretrainable Geometric Graph Neural Network for Antibody Affinity Maturation H Cai, Z Zhang, M Wang, B Zhong, Y Wu, T Ying, J Tang bioRxiv, 2023.08. 10.552845, 2023 | 1 | 2023 |
| Conditional Protein Denoising Diffusion Generates Programmable Endonucleases B Zhou, L Zheng, B Wu, K Yi, B Zhong, P Lio, L Hong bioRxiv, 2023.08. 10.552783, 2023 | 1 | 2023 |
| Combinatorial cell surface display system in Escherichia coli for noninvasive colorectal cancer detection C Hsiao, Q Fang, S Zheng, P He, K Zhang, Y Hong, Y Ran, S Sun, Z Liu, ... Journal of Bio-X Research 2 (04), 185-196, 2019 | 1 | 2019 |
| Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models Y Tan, M Li, B Zhou, B Zhong, L Zheng, P Tan, Z Zhou, H Yu, G Fan, ... arXiv preprint arXiv:2404.14850, 2024 | | 2024 |
| Fusing Neural and Physical: Augment Protein Conformation Sampling with Tractable Simulations J Lu, Z Zhang, B Zhong, C Shi, J Tang arXiv preprint arXiv:2402.10433, 2024 | | 2024 |
| Scaffold-Lab: Critical Evaluation and Ranking of Protein Backbone Generation Methods in A Unified Framework Z Zheng, B Zhang, B Zhong, K Liu, Z Li, J Zhu, J Yu, T Wei, HF Chen bioRxiv, 2024.02. 10.579743, 2024 | | 2024 |
| Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins Using Fine-tuned Diffusion Models J Zhu, Z Li, B Zhang, Z Zheng, B Zhong, J Bai, T Wang, T Wei, J Yang, ... bioRxiv, 2024.05. 05.592611, 2024 | | 2024 |
Jiarui LuMila - Quebec AI InstituteVerified email at umontreal.ca
