| Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches MTW Ebbert, ME Wadsworth, LA Staley, KL Hoyt, B Pickett, J Miller, ... BMC bioinformatics 17, 491-500, 2016 | 169 | 2016 |
| Alzheimer's disease alters oligodendrocytic glycolytic and ketolytic gene expression ER Saito, JB Miller, O Harari, C Cruchaga, KA Mihindukulasuriya, ... Alzheimer's & Dementia 17 (9), 1474-1486, 2021 | 38 | 2021 |
| Genetic analysis, structural modeling, and direct coupling analysis suggest a mechanism for phosphate signaling in Escherichia coli SG Gardner, JB Miller, T Dean, T Robinson, MC Erickson, PG Ridge, ... BMC genetics 16, 1-11, 2015 | 29 | 2015 |
| Kmer-SSR: a fast and exhaustive SSR search algorithm BD Pickett, JB Miller, PG Ridge Bioinformatics 33 (24), 3922-3928, 2017 | 27 | 2017 |
| JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm JB Miller, BD Pickett, PG Ridge Bioinformatics 35 (4), 546-552, 2019 | 26 | 2019 |
| Arabidopsis thaliana organelles mimic the T7 phage DNA replisome with specific interactions between Twinkle protein and DNA polymerases Pol1A and Pol1B SA Morley, A Peralta-Castro, LG Brieba, J Miller, KL Ong, PG Ridge, ... BMC plant biology 19, 1-16, 2019 | 20 | 2019 |
| ExtRamp: a novel algorithm for extracting the ramp sequence based on the tRNA adaptation index or relative codon adaptiveness JB Miller, LR Brase, PG Ridge Nucleic Acids Research 47 (3), 1123-1131, 2019 | 16 | 2019 |
| Assembly of 809 whole mitochondrial genomes with clinical, imaging, and fluid biomarker phenotyping PG Ridge, ME Wadsworth, JB Miller, AJ Saykin, RC Green, JSK Kauwe, ... Alzheimer's & Dementia 14 (4), 514-519, 2018 | 16 | 2018 |
| Missing something? Codon aversion as a new character system in phylogenetics JB Miller, AA Hippen, JR Belyeu, MF Whiting, PG Ridge Cladistics 33 (5), 545-556, 2017 | 15 | 2017 |
| Human viruses have codon usage biases that match highly expressed proteins in the tissues they infect JB Miller, AA Hippen, SM Wright, C Morris, PG Ridge Biomed Genet Genomics 2 (2), 1-5, 2017 | 14 | 2017 |
| Predicting clinical dementia rating using blood rna levels JB Miller, JSK Kauwe Genes 11 (6), 706, 2020 | 12 | 2020 |
| CAM: an alignment-free method to recover phylogenies using codon aversion motifs JB Miller, LM McKinnon, MF Whiting, PG Ridge PeerJ 7, e6984, 2019 | 12 | 2019 |
| CUBAP: an interactive web portal for analyzing codon usage biases across populations MW Hodgman, JB Miller, TE Meurs, JSK Kauwe Nucleic acids research 48 (19), 11030-11039, 2020 | 11 | 2020 |
| Codon use and aversion is largely phylogenetically conserved across the tree of life JB Miller, LM McKinnon, MF Whiting, PG Ridge Molecular phylogenetics and evolution 144, 106697, 2020 | 11 | 2020 |
| Analysis of high‐risk pedigrees identifies 11 candidate variants for Alzheimer's disease CC Teerlink, JB Miller, EL Vance, LA Staley, J Stevens, JP Tavana, ... Alzheimer's & Dementia 18 (2), 307-317, 2022 | 10 | 2022 |
| Failure to detect synergy between variants in transferrin and hemochromatosis and Alzheimer's disease in large cohort E Vance, JDG Murcia, JB Miller, L Staley, PK Crane, S Mukherjee, ... Neurobiology of aging 89, 142. e9-142. e12, 2020 | 10 | 2020 |
| Codon pairs are phylogenetically conserved: A comprehensive analysis of codon pairing conservation across the Tree of Life JB Miller, LM McKinnon, MF Whiting, JSK Kauwe, PG Ridge PLoS One 15 (5), e0232260, 2020 | 8 | 2020 |
| The Polygenic Risk Score Knowledge Base offers a centralized online repository for calculating and contextualizing polygenic risk scores ML Page, EL Vance, ME Cloward, E Ringger, L Dayton, MTW Ebbert, ... Communications biology 5 (1), 899, 2022 | 7 | 2022 |
| Pairwise correlation analysis of the Alzheimer’s disease neuroimaging initiative (ADNI) dataset reveals significant feature correlation ED Huckvale, MW Hodgman, BB Greenwood, DO Stucki, KM Ward, ... Genes 12 (11), 1661, 2021 | 7 | 2021 |
| Identification and genomic analysis of pedigrees with exceptional longevity identifies candidate rare variants JB Miller, E Ward, LA Staley, J Stevens, CC Teerlink, JP Tavana, ... Neurobiology of disease 143, 104972, 2020 | 7 | 2020 |
