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MMBioS
MMBioS
University of Pittsburgh; Carnegie Mellon University; Salk Institute for Biological Studies; PSC
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Cited by
Cited by
Year
Oxidized arachidonic and adrenic PEs navigate cells to ferroptosis
VE Kagan, G Mao, F Qu, JPF Angeli, S Doll, CS Croix, HH Dar, B Liu, ...
Nature chemical biology 13 (1), 81-90, 2017
18472017
Cardiolipin externalization to the outer mitochondrial membrane acts as an elimination signal for mitophagy in neuronal cells
CT Chu, J Ji, RK Dagda, JF Jiang, YY Tyurina, AA Kapralov, VA Tyurin, ...
Nature cell biology 15 (10), 1197-1205, 2013
9812013
PEBP1 wardens ferroptosis by enabling lipoxygenase generation of lipid death signals
SE Wenzel, YY Tyurina, J Zhao, CMS Croix, HH Dar, G Mao, VA Tyurin, ...
Cell 171 (3), 628-641. e26, 2017
6602017
Anatomy and function of an excitatory network in the visual cortex
WCA Lee, V Bonin, M Reed, BJ Graham, G Hood, K Glattfelder, RC Reid
Nature 532 (7599), 370-374, 2016
4852016
Whole-brain serial-section electron microscopy in larval zebrafish
DGC Hildebrand, M Cicconet, RM Torres, W Choi, TM Quan, J Moon, ...
Nature 545 (7654), 345-349, 2017
3132017
Nanoconnectomic upper bound on the variability of synaptic plasticity
TM Bartol Jr, C Bromer, J Kinney, MA Chirillo, JN Bourne, KM Harris, ...
elife 4, e10778, 2015
3072015
Allostery in its many disguises: from theory to applications
SJ Wodak, E Paci, NV Dokholyan, IN Berezovsky, A Horovitz, J Li, ...
Structure 27 (4), 566-578, 2019
3002019
Effects of N-glycosylation on protein conformation and dynamics: Protein Data Bank analysis and molecular dynamics simulation study
HS Lee, Y Qi, W Im
Scientific reports 5 (1), 1-7, 2015
2812015
Dynamic architecture of a protein kinase
CL McClendon, AP Kornev, MK Gilson, SS Taylor
Proceedings of the National Academy of Sciences 111 (43), E4623-E4631, 2014
2702014
Weighted ensemble simulation: review of methodology, applications, and software
DM Zuckerman, LT Chong
Annual review of biophysics 46, 43-57, 2017
2642017
The molecular structure of the liquid-ordered phase of lipid bilayers
AJ Sodt, ML Sandar, K Gawrisch, RW Pastor, E Lyman
Journal of the American Chemical Society 136 (2), 725-732, 2014
2462014
CHARMM-GUI Glycan Modeler for modeling and simulation of carbohydrates and glycoconjugates
SJ Park, J Lee, Y Qi, NR Kern, HS Lee, S Jo, IS Joung, K Joo, J Lee, W Im
Glycobiology 29 (4), 320-331, 2019
2382019
Iron catalysis of lipid peroxidation in ferroptosis: Regulated enzymatic or random free radical reaction?
DA Stoyanovsky, YY Tyurina, I Shrivastava, I Bahar, VA Tyurin, ...
Free Radical Biology and Medicine 133, 153-161, 2019
2312019
BioNetGen 2.2: advances in rule-based modeling
LA Harris, JS Hogg, JJ Tapia, JAP Sekar, S Gupta, I Korsunsky, A Arora, ...
Bioinformatics 32 (21), 3366-3368, 2016
2312016
The interface of protein structure, protein biophysics, and molecular evolution
DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ...
Protein Science 21 (6), 769-785, 2012
2282012
CHARMM all-atom additive force field for sphingomyelin: elucidation of hydrogen bonding and of positive curvature
RM Venable, AJ Sodt, B Rogaski, H Rui, E Hatcher, AD MacKerell, ...
Biophysical journal 107 (1), 134-145, 2014
2132014
Evol and ProDy for bridging protein sequence evolution and structural dynamics
A Bakan, A Dutta, W Mao, Y Liu, C Chennubhotla, TR Lezon, I Bahar
Bioinformatics 30 (18), 2681-2683, 2014
2112014
Mechanisms of CFTR Functional Variants That Impair Regulated Bicarbonate Permeation and Increase Risk for Pancreatitis but Not for Cystic Fibrosis
J LaRusch, J Jung, IJ General, MD Lewis, HW Park, RE Brand, A Gelrud, ...
PLoS genetics 10 (7), e1004376, 2014
2042014
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
2032020
Further along the road less traveled: AMBER ff15ipq, an original protein force field built on a self-consistent physical model
KT Debiec, DS Cerutti, LR Baker, AM Gronenborn, DA Case, LT Chong
Journal of chemical theory and computation 12 (8), 3926-3947, 2016
1902016
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Articles 1–20