| TADB 2.0: an updated database of bacterial type II toxin–antitoxin loci Y Xie, Y Wei, Y Shen, X Li, H Zhou, C Tai, Z Deng, HY Ou Nucleic acids research 46 (D1), D749-D753, 2018 | 227 | 2018 |
| Supercomputer-based ensemble docking drug discovery pipeline with application to COVID-19 A Acharya, R Agarwal, MB Baker, J Baudry, D Bhowmik, S Boehm, ... Journal of chemical information and modeling 60 (12), 5832-5852, 2020 | 157 | 2020 |
| Antitumor T-cell immunity contributes to pancreatic cancer immune resistance R Ajina, ZX Malchiodi, AA Fitzgerald, A Zuo, S Wang, M Moussa, ... Cancer immunology research 9 (4), 386-400, 2021 | 11 | 2021 |
| Property space mapping of Pseudomonas aeruginosa permeability to small molecules IV Leus, JW Weeks, V Bonifay, Y Shen, L Yang, CJ Cooper, D Nath, ... Scientific reports 12 (1), 8220, 2022 | 9 | 2022 |
| Progress on the development and application of biopesticide Shenqinmycin F Yunling, SUN Shuang, S Yue, HE Yawen Chinese Journal of Pesticide Science 16 (4), 387-393, 2014 | 9 | 2014 |
| HLA class I supertype classification based on structural similarity Y Shen, JM Parks, JC Smith The Journal of Immunology 210 (1), 103-114, 2023 | 3 | 2023 |
| A 5′ UTR language model for decoding untranslated regions of mRNA and function predictions Y Chu, D Yu, Y Li, K Huang, Y Shen, L Cong, J Zhang, M Wang Nature Machine Intelligence, 1-12, 2024 | 1 | 2024 |
| Immune Selection Pressure Contributes to Pancreatic Cancer Immune Evasion R Ajina, A Zuo, S Wang, M Moussa, CJ Cooper, Y Shen, QR Johnson, ... bioRxiv, 2020.06. 15.151274, 2020 | 1 | 2020 |
| HLA-Clus: HLA class I clustering based on 3D structure Y Shen, JM Parks, JC Smith BMC bioinformatics 24 (1), 189, 2023 | | 2023 |
| Author Correction: Property space mapping of Pseudomonas aeruginosa permeability to small molecules IV Leus, JW Weeks, V Bonifay, Y Shen, L Yang, CJ Cooper, D Nath, ... Scientific reports 13, 2023 | | 2023 |
| Malignant pancreatic cancer cells respond to immune selection pressure to foster immunosuppression R Ajina, A Zuo, M Moussa, SJ Cooper, Y Shen, QR Johnson, JM Parks, ... Cancer Research 79 (13_Supplement), 4584-4584, 2019 | | 2019 |
