| Copy number signature analysis tool and its application in prostate cancer reveals distinct mutational processes and clinical outcomes S Wang, H Li, M Song, Z Tao, T Wu, Z He, X Zhao, K Wu, XS Liu Plos Genetics 17 (5), e1009557, 2021 | 78 | 2021 |
| UCSCXenaShiny: an R/CRAN package for interactive analysis of UCSC Xena data S Wang, Y Xiong, L Zhao, K Gu, Y Li, F Zhao, J Li, M Wang, H Wang, ... Bioinformatics 38 (2), 527-529, 2022 | 73 | 2022 |
| Sigflow: an automated and comprehensive pipeline for cancer genome mutational signature analysis S Wang, Z Tao, T Wu, XS Liu Bioinformatics 37 (11), 1590-1592, 2021 | 28 | 2021 |
| Extrachromosomal DNA formation enables tumor immune escape potentially through regulating antigen presentation gene expression T Wu, C Wu, X Zhao, G Wang, W Ning, Z Tao, F Chen, XS Liu Scientific reports 12 (1), 3590, 2022 | 15 | 2022 |
| Copy number signature analyses in prostate cancer reveal distinct etiologies and clinical outcomes S Wang, H Li, M Song, Z He, T Wu, X Wang, Z Tao, K Wu, XS Liu MedRxiv, 2020.04. 27.20082404, 2020 | 9 | 2020 |
| Quantification of neoantigen-mediated immunoediting in cancer evolution T Wu, G Wang, X Wang, S Wang, X Zhao, C Wu, W Ning, Z Tao, F Chen, ... Cancer Research 82 (12), 2226-2238, 2022 | 7 | 2022 |
| Pan-cancer noncoding genomic analysis identifies functional CDC20 promoter mutation hotspots Z He, T Wu, S Wang, J Zhang, X Sun, Z Tao, X Zhao, H Li, K Wu, XS Liu Iscience 24 (4), 2021 | 7 | 2021 |
| The repertoire of copy number alteration signatures in human cancer Z Tao, S Wang, C Wu, T Wu, X Zhao, W Ning, G Wang, J Wang, J Chen, ... Briefings in Bioinformatics 24 (2), bbad053, 2023 | 6 | 2023 |
| Accurate prediction of pan-cancer types using machine learning with minimal number of DNA methylation sites W Ning, T Wu, C Wu, S Wang, Z Tao, G Wang, X Zhao, K Diao, J Wang, ... Journal of Molecular Cell Biology 15 (4), mjad023, 2023 | 1 | 2023 |
| Copy number alteration features in pan-cancer homologous recombination deficiency prediction and biology H Yao, H Li, J Wang, T Wu, W Ning, K Diao, C Wu, G Wang, Z Tao, X Zhao, ... Communications Biology 6 (1), 527, 2023 | | 2023 |
| Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution T Wu, G Wang, X Wang, S Wang, X Zhao, C Wu, W Ning, Z Tao, F Chen, ... bioRxiv, 2022.04. 08.487711, 2022 | | 2022 |
| Extrachromosomal DNA is associated with decreased immune cell infiltration and antigen presentation, represents a potential cancer immune evasion mechanism T Wu, C Wu, X Zhao, G Wang, W Ning, Z Tao, F Chen, XS Liu bioRxiv, 2022.02. 04.479205, 2022 | | 2022 |
