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Joe Brown
Joe Brown
Verified email at utah.edu - Homepage
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FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool
J Brown, M Pirrung, LA McCue
Bioinformatics 33 (19), 3137-3139, 2017
6512017
Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation
MG Pachiadaki, E Sintes, K Bergauer, JM Brown, NR Record, BK Swan, ...
Science 358 (6366), 1046-1051, 2017
2552017
Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles
R Stepanauskas, EA Fergusson, J Brown, NJ Poulton, B Tupper, ...
Nature Communications 8 (1), 84, 2017
1652017
Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles
R Stepanauskas, EA Fergusson, J Brown, NJ Poulton, B Tupper, ...
Nature Communications 8 (1), 84, 2017
1652017
Charting the complexity of the marine microbiome through single-cell genomics
MG Pachiadaki, JM Brown, J Brown, O Bezuidt, PM Berube, SJ Biller, ...
Cell 179 (7), 1623-1635. e11, 2019
1632019
Concurrent alterations in TERT, KDM6A, and the BRCA pathway in bladder cancer
ML Nickerson, GM Dancik, KM Im, MG Edwards, S Turan, J Brown, ...
Clinical Cancer Research 20 (18), 4935-4948, 2014
1262014
Rokubacteria: genomic giants among the uncultured bacterial phyla
ED Becraft, T Woyke, J Jarett, N Ivanova, JM Brown, MCY Lau, T Onstott, ...
Frontiers in microbiology 8, 302970, 2017
1202017
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
S Kieser, J Brown, EM Zdobnov, M Trajkovski, LA McCue
BMC bioinformatics 21, 1-8, 2020
1162020
HITS-CLIP reveals key regulators of nuclear receptor signaling in breast cancer
MM Pillai, AE Gillen, TM Yamamoto, E Kline, J Brown, K Flory, ...
Breast cancer research and treatment 146, 85-97, 2014
922014
ISiCLE: a quantum chemistry pipeline for establishing in silico collision cross section libraries
SM Colby, DG Thomas, JR Nuñez, DJ Baxter, KR Glaesemann, JM Brown, ...
Analytical chemistry 91 (7), 4346-4356, 2019
892019
Genome-wide analysis of miRNA-mRNA interactions in marrow stromal cells
I Balakrishnan, X Yang, J Brown, A Ramakrishnan, B Torok-Storb, ...
Stem cells 32 (3), 662-673, 2014
862014
Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities
EM Bottos, DW Kennedy, EB Romero, SJ Fansler, JM Brown, LM Bramer, ...
FEMS microbiology ecology 94 (8), fiy110, 2018
712018
Samplot: a platform for structural variant visual validation and automated filtering
JR Belyeu, M Chowdhury, J Brown, BS Pedersen, MJ Cormier, ...
Genome biology 22 (1), 161, 2021
622021
De novo structural mutation rates and gamete-of-origin biases revealed through genome sequencing of 2,396 families
JR Belyeu, H Brand, H Wang, X Zhao, BS Pedersen, J Feusier, M Gupta, ...
The American Journal of Human Genetics 108 (4), 597-607, 2021
612021
Effective variant filtering and expected candidate variant yield in studies of rare human disease
BS Pedersen, JM Brown, H Dashnow, AD Wallace, M Velinder, ...
NPJ Genomic Medicine 6 (1), 60, 2021
552021
Pre-incision antibiotic prophylaxis reduces the incidence of post-caesarean surgical site infection
J Brown, M Thompson, S Sinnya, A Jeffery, C De Costa, C Woods, ...
Journal of Hospital Infection 83 (1), 68-70, 2013
542013
Metaphenomic responses of a native prairie soil microbiome to moisture perturbations
T Roy Chowdhury, JY Lee, EM Bottos, CJ Brislawn, RA White III, ...
Msystems 4 (4), 10.1128/msystems. 00061-19, 2019
49*2019
Identification of essential genes for Escherichia coli aryl polyene biosynthesis and function in biofilm formation
I Johnston, LJ Osborn, RL Markley, EA McManus, A Kadam, KB Schultz, ...
bioRxiv, 2020.04. 22.055939, 2021
352021
Spatial distribution of prokaryotic communities in hypersaline soils
B Vera-Gargallo, TR Chowdhury, J Brown, SJ Fansler, A Durán-Viseras, ...
Scientific Reports 9 (1), 1769, 2019
352019
Single cell genomics reveals viruses consumed by marine protists
JM Brown, JM Labonté, J Brown, NR Record, NJ Poulton, ME Sieracki, ...
Frontiers in Microbiology 11, 524828, 2020
342020
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