| Iterative orthology prediction uncovers new mitochondrial proteins and identifies C12orf62 as the human ortholog of COX14, a protein involved in the assembly of cytochrome c … R Szklarczyk, BFJ Wanschers, TD Cuypers, JJ Esseling, M Riemersma, ... Genome biology 13, 1-14, 2012 | 116 | 2012 |
| Virtual genomes in flux: an interplay of neutrality and adaptability explains genome expansion and streamlining TD Cuypers, P Hogeweg Genome Biology and Evolution, 2012 | 50 | 2012 |
| A synergism between adaptive effects and evolvability drives whole genome duplication to fixation TD Cuypers, P Hogeweg PLoS computational biology 10 (4), e1003547, 2014 | 36 | 2014 |
| Evolution of evolvability and phenotypic plasticity in virtual cells TD Cuypers, JP Rutten, P Hogeweg BMC evolutionary biology 17, 1-16, 2017 | 33 | 2017 |
| Trusting the hand that feeds: microbes evolve to anticipate a serial transfer protocol as individuals or collectives B van Dijk, J Meijer, TD Cuypers, P Hogeweg BMC evolutionary biology 19, 1-18, 2019 | 9 | 2019 |
| Endless evolutionary paths to Virtual Microbes TD Cuypers, P Hogeweg Workshop, First EvoEvo Workshop, satellite workshop of ECAL2015, 2015 | 4 | 2015 |
| Evolution of r-and K-selected species of Virtual Microbes: a case study in a simple fluctuating 2-resource environment B van Dijk, T Cuypers, P Hogeweg 2nd EvoEvo Workshop, satellite workshop of CCS2016, 2016 | 3 | 2016 |
| Virtual Microbes evolve multiple mechanisms to the same end: anticipating a serial transfer protocol B van Dijk, J Meijer, TD Cuypers, P Hogeweg bioRxiv, 554766, 2019 | | 2019 |
| Virtual Microbes: a model for studying eco-evolutionary dynamics in microbial evolution TD Cuypers | | 2018 |
