| Universal dependencies v1: A multilingual treebank collection J Nivre, MC De Marneffe, F Ginter, Y Goldberg, J Hajic, CD Manning, ... Proceedings of the Tenth International Conference on Language Resources and …, 2016 | 1690 | 2016 |
| Universal Stanford dependencies: A cross-linguistic typology. MC De Marneffe, T Dozat, N Silveira, K Haverinen, F Ginter, J Nivre, ... LREC 14, 4585-4592, 2014 | 753 | 2014 |
| CoNLL 2018 shared task: Multilingual parsing from raw text to universal dependencies D Zeman, J Hajic, M Popel, M Potthast, M Straka, F Ginter, J Nivre, ... Proceedings of the CoNLL 2018 Shared Task: Multilingual parsing from raw …, 2018 | 669 | 2018 |
| Distributional semantics resources for biomedical text processing S Moen, TSS Ananiadou Proceedings of LBM, 39-44, 2013 | 616 | 2013 |
| BioInfer: a corpus for information extraction in the biomedical domain S Pyysalo, F Ginter, J Heimonen, J Björne, J Boberg, J Järvinen, ... BMC bioinformatics 8, 1-24, 2007 | 589 | 2007 |
| Universal Dependencies v2: An evergrowing multilingual treebank collection J Nivre, MC De Marneffe, F Ginter, J Hajič, CD Manning, S Pyysalo, ... arXiv preprint arXiv:2004.10643, 2020 | 572 | 2020 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17, 1-19, 2016 | 432 | 2016 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 397 | 2019 |
| All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski BMC bioinformatics 9, 1-12, 2008 | 386 | 2008 |
| Multilingual is not enough: BERT for Finnish A Virtanen, J Kanerva, R Ilo, J Luoma, J Luotolahti, T Salakoski, F Ginter, ... arXiv preprint arXiv:1912.07076, 2019 | 341 | 2019 |
| Comparative analysis of five protein-protein interaction corpora S Pyysalo, A Airola, J Heimonen, J Björne, F Ginter, T Salakoski BMC bioinformatics 9, 1-11, 2008 | 307 | 2008 |
| Extracting complex biological events with rich graph-based feature sets J Björne, J Heimonen, F Ginter, A Airola, T Pahikkala, T Salakoski Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, 10-18, 2009 | 270 | 2009 |
| Universal Dependencies 1.2 J Nivre, Ž Agić, MJ Aranzabe, M Asahara, A Atutxa, M Ballesteros, J Bauer, ... Universal Dependencies Consortium, 2015 | 250 | 2015 |
| Complex event extraction at PubMed scale J Björne, F Ginter, S Pyysalo, J Tsujii, T Salakoski Bioinformatics 26 (12), i382-i390, 2010 | 159 | 2010 |
| Building the essential resources for Finnish: the Turku Dependency Treebank K Haverinen, J Nyblom, T Viljanen, V Laippala, S Kohonen, A Missilä, ... Language Resources and Evaluation 48, 493-531, 2014 | 142 | 2014 |
| Turku neural parser pipeline: An end-to-end system for the CoNLL 2018 shared task J Kanerva, F Ginter, N Miekka, A Leino, T Salakoski Proceedings of the CoNLL 2018 Shared Task: Multilingual parsing from raw …, 2018 | 137 | 2018 |
| Large-scale event extraction from literature with multi-level gene normalization S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ... PloS one 8 (4), e55814, 2013 | 131 | 2013 |
| Joint morphological and syntactic analysis for richly inflected languages B Bohnet, J Nivre, I Boguslavsky, R Farkas, F Ginter, J Hajič Transactions of the Association for Computational Linguistics 1, 415-428, 2013 | 130 | 2013 |
| A graph kernel for protein-protein interaction extraction A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski Proceedings of the workshop on current trends in biomedical natural language …, 2008 | 121 | 2008 |
| Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task A Sarker, M Belousov, J Friedrichs, K Hakala, S Kiritchenko, F Mehryary, ... Journal of the American Medical Informatics Association 25 (10), 1274-1283, 2018 | 94 | 2018 |
Jari BjörnePost-doctoral researcher, University of Turku, FinlandVerified email at utu.fi
