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Lyla Atta
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Interactions between cancer cells and immune cells drive transitions to mesenchymal-like states in glioblastoma
T Hara, R Chanoch-Myers, ND Mathewson, C Myskiw, L Atta, L Bussema, ...
Cancer cell 39 (6), 779-792. e11, 2021
2932021
Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data
BF Miller, F Huang, L Atta, A Sahoo, J Fan
Nature communications 13 (1), 2339, 2022
802022
Computational challenges and opportunities in spatially resolved transcriptomic data analysis
L Atta, J Fan
Nature Communications 12 (1), 5283, 2021
412021
A crisis-responsive framework for medical device development applied to the COVID-19 pandemic
MJ Antonini, D Plana, S Srinivasan, L Atta, A Achanta, H Yang, ...
Frontiers in digital health 3, 617106, 2021
172021
VeloViz: RNA velocity-informed embeddings for visualizing cellular trajectories
L Atta, A Sahoo, J Fan
Bioinformatics 38 (2), 391-396, 2022
152022
Systems modeling identifies divergent receptor tyrosine kinase reprogramming to MAPK pathway inhibition
AM Claas, L Atta, S Gordonov, AS Meyer, DA Lauffenburger
Cellular and molecular bioengineering 11, 451-469, 2018
112018
STalign: Alignment of spatial transcriptomics data using diffeomorphic metric mapping
K Clifton, M Anant, G Aihara, L Atta, OK Aimiuwu, JM Kebschull, MI Miller, ...
Nature communications 14 (1), 8123, 2023
102023
Alignment of spatial transcriptomics data using diffeomorphic metric mapping
K Clifton, M Anant, G Aihara, L Atta, OK Aimiuwu, JM Kebschull, MI Miller, ...
bioRxiv, 2023
72023
Considerations for the selection and use of disinfectants against SARS-CoV-2 in a health care setting
K Tyan, A Levin, A Avalos-Pacheco, D Plana, EA Rand, H Yang, ...
Open forum infectious diseases 7 (9), ofaa396, 2020
72020
De novo powered air-purifying respirator design and fabrication for pandemic response
A Kothakonda, L Atta, D Plana, F Ward, C Davis, A Cramer, R Moran, ...
Frontiers in bioengineering and biotechnology 9, 690905, 2021
62021
Soluble PD-L1 reprograms blood monocytes to prevent cerebral edema and facilitate recovery after ischemic stroke
JE Kim, RP Lee, E Yazigi, L Atta, J Feghali, A Pant, A Jain, I Levitan, ...
Brain, Behavior, and Immunity 116, 160-174, 2024
22024
Student curriculum review team, 8 years later: Where we stand and opportunities for growth
P Kumar, CM Pickering, L Atta, AG Burns, RF Chu, T Gracie, CX Qin, ...
Medical teacher 43 (3), 314-319, 2021
22021
SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis
G Aihara, K Clifton, M Chen, L Atta, BF Miller, J Fan
bioRxiv, 2024.02. 01.578436, 2024
12024
Characterizing cell-type spatial relationships across length scales in spatially resolved omics data
R dos Santos Peixoto, BF Miller, MA Brusko, L Atta, M Anant, MA Atkinson, ...
bioRxiv, 2023.10. 05.560733, 2023
12023
159 PD-1 Agonism as a Strategy to Prevent Neuroinflammation After Acute Large Vessel Occlusion
JE Kim, RP Lee, E Yazigi, J Feghali, L Atta, A Pant, I Levitan, R Xu, ...
Neurosurgery 70 (Supplement_1), 37, 2024
2024
Gene count normalization in single-cell imaging-based spatially resolved transcriptomics
L Atta, K Clifton, M Anant, G Aihara, J Fan
bioRxiv, 2023.08. 30.555624, 2023
2023
IMMUNE CELLS INFLUENCE MESENCHYMAL-LIKE TRANSITION IN GLIOBLASTOMA
T Hara, R Chanoch-Myers, ND Mathewson, C Myskiw, L Atta, L Bussema
CANCER DISCOVERY 11 (8), 1869-1869, 2021
2021
De novo Powered Air-Purifying Respirator Design and Fabrication for Pandemic Response (preprint)
A Kothakonda, L Atta, D Plana, F Ward, C Davis, A Cramer, R Moran, ...
2021
A Crisis-Responsive Framework for Medical Device Development during the COVID-19 Pandemic (preprint)
MJ Antonini, D Plana, S Srinivasan, L Atta, A Achanta, H Yang, A Cramer, ...
2020
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Articles 1–19