| Phylogenetics: theory and practice of phylogenetic systematics EO Wiley, BS Lieberman John Wiley & Sons, 2011 | 3667 | 2011 |
| The evolutionary species concept reconsidered EO Wiley Systematic zoology 27 (1), 17-26, 1978 | 1243 | 1978 |
| Evolution as entropy DR Brooks, EO Wiley, DR Brooks University of Chicago Press, 1988 | 1138 | 1988 |
| The compleat cladist: a primer of phylogenetic procedures EO Wiley, DR Brooks, D Seigel-Causey, VA Funk Natural History Museum, University of Kansas, 1991 | 577 | 1991 |
| The tree of life and a new classification of bony fishes R Betancur-R, RE Broughton, EO Wiley, K Carpenter, JA López, C Li, ... PLoS currents 5, 2013 | 507 | 2013 |
| Vicariance biogeography EO Wiley Annual Review of Ecology and Systematics 19 (1), 513-542, 1988 | 383 | 1988 |
| The zoogeography of North American freshwater fishes CH Hocutt, EO Wiley Wiley, 1986 | 328 | 1986 |
| Karl R. Popper, systematics, and classification: a reply to Walter Bock and other evolutionary taxonomists EO Wiley Systematic zoology 24 (2), 233-243, 1975 | 280 | 1975 |
| The phylogeny and biogeography of fossil and recent gars (Actinopterygii: Lepisosteidae) MK Hecht Systematic Zoology 27 (1), 134-136, 1978 | 270 | 1978 |
| Species and speciation in phylogenetic systematics, with examples from the North American fish fauna EO Wiley, RL Mayden Annals of the Missouri botanical Garden 72 (4), 596-635, 1985 | 261 | 1985 |
| Parsimony analysis and vicariance biogeography EO Wiley Systematic Zoology 37 (3), 271-290, 1988 | 254 | 1988 |
| An integrative approach to heterochrony: the distinction between interspecific and intraspecific phenomena SM Reilly, EO Wiley, DJ Meinhardt Biological Journal of the Linnean Society 60 (1), 119-143, 1997 | 251 | 1997 |
| Niche modeling perspective on geographic range predictions in the marine environment using a machine-learning algorithm EO Wiley, KM McNyset, AT Peterson, CR Robins, AM Stewart Oceanography Society, 2003 | 250 | 2003 |
| A teleost classification based on monophyletic groups EO Wiley, GD Johnson Origin and phylogenetic interrelationships of teleosts, 2010 | 248 | 2010 |
| A defense of the evolutionary species concept EO Wiley, RL Mayden Species concepts and phylogenetic theory. A debate. Columbia University …, 2000 | 239 | 2000 |
| An annotated Linnaean hierarchy, with comments on natural taxa and competing systems EO Wiley Systematic Biology 28 (3), 308-337, 1979 | 194 | 1979 |
| Phylogenetic classification of bony fishes R Betancur-R, EO Wiley, G Arratia, A Acero, N Bailly, M Miya, G Lecointre, ... BMC evolutionary biology 17 (1), 162, 2017 | 173 | 2017 |
| Victims of history—a nonequilibrium approach to evolution EO Wiley, DR Brooks Systematic Biology 31 (1), 1-24, 1982 | 133 | 1982 |
| The place of ancestor-descendant relationships in phylogeny reconstruction GF Engelmann, EO Wiley Systematic Biology 26 (1), 1-11, 1977 | 131 | 1977 |
| Is the evolutionary species fiction?-A consideration of classes, individuals and historical entities EO Wiley Systematic Zoology 29 (1), 76-80, 1980 | 127 | 1980 |
