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Steven Weaver
Steven Weaver
Institute for Genomics and Evolutionary Medicine, Temple University
Verified email at temple.edu - Homepage
Title
Cited by
Cited by
Year
Detection of a SARS-CoV-2 variant of concern in South Africa
H Tegally, E Wilkinson, M Giovanetti, A Iranzadeh, V Fonseca, ...
Nature 592 (7854), 438-443, 2021
2657*2021
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ...
Nature 603 (7902), 679-686, 2022
13752022
Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes
S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond
Molecular biology and evolution 35 (3), 773-777, 2018
6792018
Escape of SARS-CoV-2 501Y. V2 from neutralization by convalescent plasma
S Cele, I Gazy, L Jackson, SH Hwa, H Tegally, G Lustig, J Giandhari, ...
Nature 593 (7857), 142-146, 2021
6622021
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection
MD Smith, JO Wertheim, S Weaver, B Murrell, K Scheffler, ...
Molecular biology and evolution 32 (5), 1342-1353, 2015
6112015
Gene-wide identification of episodic selection
B Murrell, S Weaver, MD Smith, JO Wertheim, S Murrell, A Aylward, ...
Molecular biology and evolution 32 (5), 1365-1371, 2015
4782015
HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies
SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ...
Molecular biology and evolution 37 (1), 295-299, 2020
3402020
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages
DP Martin, S Weaver, H Tegally, JE San, SD Shank, E Wilkinson, ...
Cell 184 (20), 5189-5200. e7, 2021
2452021
Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen
OA MacLean, S Lytras, S Weaver, JB Singer, MF Boni, P Lemey, ...
PLoS biology 19 (3), e3001115, 2021
220*2021
HIV-TRACE (TRAnsmission Cluster Engine): a tool for large scale molecular epidemiology of HIV-1 and other rapidly evolving pathogens
SL Kosakovsky Pond, S Weaver, AJ Leigh Brown, JO Wertheim
Molecular biology and evolution 35 (7), 1812-1819, 2018
2162018
Predicting the mutational drivers of future SARS-CoV-2 variants of concern
MC Maher, I Bartha, S Weaver, J Di Iulio, E Ferri, L Soriaga, FA Lempp, ...
Science translational medicine 14 (633), eabk3445, 2022
1222022
Selection analysis identifies clusters of unusual mutational changes in Omicron lineage BA. 1 that likely impact Spike function
DP Martin, S Lytras, AG Lucaci, W Maier, B Grüning, SD Shank, S Weaver, ...
Molecular Biology and Evolution 39 (4), msac061, 2022
97*2022
HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens
W Fischer, EE Giorgi, S Chakraborty, K Nguyen, T Bhattacharya, J Theiler, ...
Cell host & microbe 29 (7), 1093-1110, 2021
822021
An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic
S Kumar, Q Tao, S Weaver, M Sanderford, MA Caraballo-Ortiz, S Sharma, ...
Molecular Biology and Evolution 38 (8), 3046-3059, 2021
732021
Evolution of viral genomes: interplay between selection, recombination, and other forces
SJ Spielman, S Weaver, SD Shank, BR Magalis, M Li, ...
Evolutionary genomics: statistical and computational methods, 427-468, 2019
542019
phylotree. js-a JavaScript library for application development and interactive data visualization in phylogenetics
SD Shank, S Weaver, SL Kosakovsky Pond
BMC bioinformatics 19, 1-5, 2018
432018
Contrast-FEL—a test for differences in selective pressures at individual sites among clades and sets of branches
SL Kosakovsky Pond, SR Wisotsky, A Escalante, BR Magalis, S Weaver
Molecular biology and evolution 38 (3), 1184-1198, 2021
352021
Rapid Sequencing of Complete env Genes from Primary HIV-1 Samples
M Laird Smith, B Murrell, K Eren, C Ignacio, E Landais, S Weaver, ...
Virus Evolution 2 (2), vew018, 2016
322016
IDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platform
NL Hepler, K Scheffler, S Weaver, B Murrell, DD Richman, DR Burton, ...
PLoS computational biology 10 (9), e1003842, 2014
322014
NGS-SA
DP Martin, S Weaver, H Tegally, JE San, SD Shank, E Wilkinson, ...
Williamson, C, 2021
302021
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