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Christian Hoffmann
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Linking long-term dietary patterns with gut microbial enterotypes
GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ...
Science 334 (6052), 105-108, 2011
68632011
High-fat diet determines the composition of the murine gut microbiome independently of obesity
MA Hildebrandt, C Hoffmann, SA Sherrill–Mix, SA Keilbaugh, M Hamady, ...
Gastroenterology 137 (5), 1716-1724. e2, 2009
17492009
Associating microbiome composition with environmental covariates using generalized UniFrac distances
J Chen, K Bittinger, ES Charlson, C Hoffmann, J Lewis, GD Wu, ...
Bioinformatics 28 (16), 2106-2113, 2012
9402012
Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents
C Hoffmann, S Dollive, S Grunberg, J Chen, H Li, GD Wu, JD Lewis, ...
PLOS ONE 8 (6), e66019, 2013
8602013
A role for LEDGF/p75 in targeting HIV DNA integration
A Ciuffi, M Llano, E Poeschla, C Hoffmann, J Leipzig, P Shinn, JR Ecker, ...
Nature medicine 11 (12), 1287-1289, 2005
8232005
A role for LEDGF/p75 in targeting HIV DNA integration
M Llano, A Ciuffi, E Poeschla, C Hoffmann
Nature medicine, 1287-1289, 2005
823*2005
Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease
JD Lewis, EZ Chen, RN Baldassano, AR Otley, AM Griffiths, D Lee, ...
Cell host & microbe 18 (4), 489-500, 2015
8152015
Genome-wide analysis of retroviral DNA integration
F Bushman, M Lewinski, A Ciuffi, S Barr, J Leipzig, S Hannenhalli, ...
Nature Reviews Microbiology 3 (11), 848-858, 2005
5312005
The human gut microbiota: Metabolism and perspective in obesity
AC Gomes, C Hoffmann, JF Mota
Gut microbes 9 (4), 308-325, 2018
5232018
The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis
P McKenna, C Hoffmann, N Minkah, PP Aye, A Lackner, Z Liu, ...
PLoS pathogens 4 (2), e20, 2008
5112008
Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis
DA Hill, C Hoffmann, MC Abt, Y Du, D Kobuley, TJ Kirn, FD Bushman, ...
Mucosal immunology 3 (2), 148-158, 2010
4752010
Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
GD Wu, JD Lewis, C Hoffmann, YY Chen, R Knight, K Bittinger, J Hwang, ...
BMC microbiology 10 (1), 1-14, 2010
4562010
Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription
MK Lewinski, D Bisgrove, P Shinn, H Chen, C Hoffmann, S Hannenhalli, ...
Journal of virology 79 (11), 6610-6619, 2005
3372005
DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations
C Hoffmann, N Minkah, J Leipzig, G Wang, MQ Arens, P Tebas, ...
Nucleic acids research 35 (13), e91, 2007
2902007
Fungal Signature in the Gut Microbiota of Pediatric Patients With Inflammatory Bowel Disease
C Chehoud, LG Albenberg, C Judge, C Hoffmann, S Grunberg, K Bittinger, ...
Inflammatory bowel diseases 21 (8), 1948-1956, 2015
2522015
Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment
S Dollive, YY Chen, S Grunberg, K Bittinger, C Hoffmann, L Vandivier, ...
PloS one 8 (8), e71806, 2013
2362013
Cxcr2 and Cxcl5 regulate the IL-17/G-CSF axis and neutrophil homeostasis in mice
J Mei, Y Liu, N Dai, C Hoffmann, KM Hudock, P Zhang, SH Guttentag, ...
The Journal of clinical investigation 122 (3), 974-986, 2012
2122012
A role for bacterial urease in gut dysbiosis and Crohn’s disease
J Ni, TCD Shen, EZ Chen, K Bittinger, A Bailey, M Roggiani, A Sirota-Madi, ...
Science translational medicine 9 (416), 2017
1942017
Community-wide response of the gut microbiota to enteropathogenic Citrobacter rodentium infection revealed by deep sequencing
C Hoffmann, DA Hill, N Minkah, T Kirn, A Troy, D Artis, F Bushman
Infection and immunity 77 (10), 4668-4678, 2009
1572009
A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples
S Dollive, GL Peterfreund, S Sherrill-Mix, K Bittinger, R Sinha, C Hoffmann, ...
Genome biology 13 (7), R60, 2012
1562012
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Articles 1–20