DNA-binding factors shape the mouse methylome at distal regulatory regions MB Stadler, R Murr, L Burger, R Ivanek, F Lienert, A Schöler, E Nimwegen, ... Nature 480 (7378), 490-495, 2011 | 1476 | 2011 |
Visualizing genomic data using Gviz and bioconductor F Hahne, R Ivanek Statistical genomics: methods and protocols, 335-351, 2016 | 754 | 2016 |
Deja vu in proteomics. A hit parade of repeatedly identified differentially expressed proteins J Petrak, R Ivanek, O Toman, R Cmejla, J Cmejlova, D Vyoral, J Zivny, ... Proteomics 8 (9), 1744-1749, 2008 | 433 | 2008 |
Methylation-dependent and-independent genomic targeting principles of the MBD protein family T Baubec, R Ivánek, F Lienert, D Schübeler Cell 153 (2), 480-492, 2013 | 373 | 2013 |
Mutations in DNAJC5, encoding cysteine-string protein alpha, cause autosomal-dominant adult-onset neuronal ceroid lipofuscinosis L Nosková, V Stránecký, H Hartmannová, A Přistoupilová, V Barešová, ... The American Journal of Human Genetics 89 (2), 241-252, 2011 | 317 | 2011 |
Distinct progenitor lineages contribute to the heterogeneity of plasmacytoid dendritic cells PF Rodrigues, L Alberti-Servera, A Eremin, GE Grajales-Reyes, R Ivanek, ... Nature immunology 19 (7), 711-722, 2018 | 277 | 2018 |
TMEM70 mutations cause isolated ATP synthase deficiency and neonatal mitochondrial encephalocardiomyopathy A Čížková, V Stránecký, JA Mayr, M Tesařová, V Havlíčková, J Paul, ... Nature genetics 40 (11), 1288-1290, 2008 | 258 | 2008 |
Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions A Feldmann, R Ivanek, R Murr, D Gaidatzis, L Burger, D Schübeler PLoS genetics 9 (12), e1003994, 2013 | 245 | 2013 |
Gain fat—lose metastasis: converting invasive breast cancer cells into adipocytes inhibits cancer metastasis D Ishay-Ronen, M Diepenbruck, RKR Kalathur, N Sugiyama, S Tiede, ... Cancer cell 35 (1), 17-32. e6, 2019 | 242 | 2019 |
Distinct contributions of partial and full EMT to breast cancer malignancy F Lüönd, N Sugiyama, R Bill, L Bornes, C Hager, F Tang, N Santacroce, ... Developmental cell 56 (23), 3203-3221. e11, 2021 | 200 | 2021 |
Dominant renin gene mutations associated with early-onset hyperuricemia, anemia, and chronic kidney failure M Živná, H Hůlková, M Matignon, K Hodaňová, P Vylet'al, M Kalbáčová, ... The American Journal of Human Genetics 85 (2), 204-213, 2009 | 186 | 2009 |
Tead2 expression levels control the subcellular distribution of Yap and Taz, zyxin expression and epithelial–mesenchymal transition M Diepenbruck, L Waldmeier, R Ivanek, P Berninger, P Arnold, ... Journal of cell science 127 (7), 1523-1536, 2014 | 155 | 2014 |
Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs J Lopez-Rios, A Duchesne, D Speziale, G Andrey, KA Peterson, ... Nature 511 (7507), 46-51, 2014 | 126 | 2014 |
Mutations in TMEM76* cause mucopolysaccharidosis IIIC (Sanfilippo C syndrome) M Hřebíček, L Mrázová, V Seyrantepe, S Durand, NM Roslin, L Nosková, ... The American Journal of Human Genetics 79 (5), 807-819, 2006 | 122 | 2006 |
Statistical genomics: methods and protocols F Hahne, R Ivanek, E Mathé, S Davis Chapter visualizing genomic data using Gviz and Bioconductor. New York …, 2016 | 117 | 2016 |
A tumor suppressor function for notch signaling in forebrain tumor subtypes C Giachino, JL Boulay, R Ivanek, A Alvarado, C Tostado, S Lugert, ... Cancer cell 28 (6), 730-742, 2015 | 108 | 2015 |
HIF and reactive oxygen species regulate oxidative phosphorylation in cancer E Hervouet, A Cízková, J Demont, A Vojtísková, P Pecina, ... Carcinogenesis 29 (8), 1528-1537, 2008 | 105 | 2008 |
Mapping gene regulatory circuitry of Pax6 during neurogenesis S Thakurela, N Tiwari, S Schick, A Garding, R Ivanek, B Berninger, ... Cell discovery 2 (1), 1-22, 2016 | 89 | 2016 |
A hierarchical regulatory landscape during the multiple stages of EMT N Meyer-Schaller, M Cardner, M Diepenbruck, M Saxena, S Tiede, ... Developmental cell 48 (4), 539-553. e6, 2019 | 78 | 2019 |
The FAK inhibitor BI 853520 exerts anti-tumor effects in breast cancer S Tiede, N Meyer-Schaller, RKR Kalathur, R Ivanek, E Fagiani, ... Oncogenesis 7 (9), 73, 2018 | 65 | 2018 |