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Shiro Fukuda
Shiro Fukuda
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Verified email at genome.rcast.u-tokyo.ac.jp
Title
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Cited by
Year
The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
40682005
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
RIKEN Genome Exploration Research Group Phase I Team: Carninci P. 2 Hayatsu ...
Nature 420 (6915), 563-573, 2002
20702002
Genome-wide analysis of mammalian promoter architecture and evolution
P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ...
Nature genetics 38 (6), 626-635, 2006
15972006
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
S Kikuchi, K Satoh, T Nagata, N Kawagashira, K Doi, N Kishimoto, ...
science 301 (5631), 376-379, 2003
10252003
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
T Shiraki, S Kondo, S Katayama, K Waki, T Kasukawa, H Kawaji, ...
Proceedings of the National Academy of Sciences 100 (26), 15776-15781, 2003
9562003
Functional annotation of a full-length mouse cDNA collection
General organizer Hayashizaki Y. yosihide@ gsc. riken. go. uk 1 2 44 b
Nature 409 (6821), 685-690, 2001
8822001
Gateways to the FANTOM5 promoter level mammalian expression atlas
M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ...
Genome biology 16, 1-14, 2015
8372015
An atlas of combinatorial transcriptional regulation in mouse and man
T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ...
Cell 140 (5), 744-752, 2010
8312010
Insights into social insects from the genome of the honeybee Apis mellifera
Honeybee Genome Sequencing Consortium Overall project leadership: Weinstock ...
Nature 443 (7114), 931-949, 2006
7222006
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
T Ravasi, H Suzuki, KC Pang, S Katayama, M Furuno, R Okunishi, ...
Genome research 16 (1), 11-19, 2006
6262006
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ...
Science 347 (6225), 1010-1014, 2015
5982015
CAGE: cap analysis of gene expression
R Kodzius, M Kojima, H Nishiyori, M Nakamura, S Fukuda, M Tagami, ...
Nature methods 3 (3), 211-222, 2006
5492006
Integrative molecular characterization of malignant pleural mesothelioma
J Hmeljak, F Sanchez-Vega, KA Hoadley, J Shih, C Stewart, D Heiman, ...
Cancer discovery 8 (12), 1548-1565, 2018
4802018
Tiny RNAs associated with transcription start sites in animals
RJ Taft, EA Glazov, N Cloonan, C Simons, S Stephen, GJ Faulkner, ...
Nature genetics 41 (5), 572-578, 2009
4342009
Hidden layers of human small RNAs
H Kawaji, M Nakamura, Y Takahashi, A Sandelin, S Katayama, S Fukuda, ...
BMC genomics 9, 1-21, 2008
3652008
FANTOM5 CAGE profiles of human and mouse samples
S Noguchi, T Arakawa, S Fukuda, M Furuno, A Hasegawa, F Hori, ...
Scientific data 4 (1), 1-10, 2017
2302017
Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia
P Carninci, K Waki, T Shiraki, H Konno, K Shibata, M Itoh, K Aizawa, ...
Genome research 13 (6b), 1273-1289, 2003
2192003
Clusters of internally primed transcripts reveal novel long noncoding RNAs
M Furuno, KC Pang, N Ninomiya, S Fukuda, MC Frith, C Bult, C Kai, ...
PLoS genetics 2 (4), e37, 2006
2012006
Transcriptome-based systematic identification of extracellular matrix proteins
R Manabe, K Tsutsui, T Yamada, M Kimura, I Nakano, C Shimono, ...
Proceedings of the National Academy of Sciences 105 (35), 12849-12854, 2008
1602008
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
1412014
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