Follow
Ryan Layer
Ryan Layer
Verified email at colorado.edu - Homepage
Title
Cited by
Cited by
Year
LUMPY: a probabilistic framework for structural variant discovery
RM Layer, C Chiang, AR Quinlan, IM Hall
Genome biology 15, 1-19, 2014
13672014
SpeedSeq: ultra-fast personal genome analysis and interpretation
C Chiang, RM Layer, GG Faust, MR Lindberg, DB Rose, EP Garrison, ...
Nature methods 12 (10), 966-968, 2015
5192015
Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues
Y Shibata, P Kumar, R Layer, S Willcox, JR Gagan, JD Griffith, A Dutta
Science 336 (6077), 82-86, 2012
2672012
An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder
DM Werling, H Brand, JY An, MR Stone, L Zhu, JT Glessner, RL Collins, ...
Nature genetics 50 (5), 727-736, 2018
2582018
A map of constrained coding regions in the human genome
JM Havrilla, BS Pedersen, RM Layer, AR Quinlan
Nature genetics 51 (1), 88-95, 2019
2392019
Mapping and characterization of structural variation in 17,795 human genomes
HJ Abel, DE Larson, AA Regier, C Chiang, I Das, KL Kanchi, RM Layer, ...
Nature 583 (7814), 83-89, 2020
2132020
MicroRNA-378 targets the myogenic repressor MyoR during myoblast differentiation
J Gagan, BK Dey, R Layer, Z Yan, A Dutta
Journal of Biological Chemistry 286 (22), 19431-19438, 2011
2012011
Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms
A Malhotra, M Lindberg, GG Faust, ML Leibowitz, RA Clark, RM Layer, ...
Genome research 23 (5), 762-776, 2013
1982013
A complete reference genome improves analysis of human genetic variation
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
Science 376 (6588), eabl3533, 2022
1832022
Vcfanno: fast, flexible annotation of genetic variants
BS Pedersen, RM Layer, AR Quinlan
Genome biology 17, 1-9, 2016
1632016
Combating subclonal evolution of resistant cancer phenotypes
SW Brady, JA McQuerry, Y Qiao, SR Piccolo, G Shrestha, DF Jenkins, ...
Nature communications 8 (1), 1231, 2017
1472017
GIGGLE: a search engine for large-scale integrated genome analysis
RM Layer, BS Pedersen, T DiSera, GT Marth, J Gertz, AR Quinlan
Nature methods 15 (2), 123-126, 2018
1352018
MUNC, a long noncoding RNA that facilitates the function of MyoD in skeletal myogenesis
AC Mueller, MA Cichewicz, BK Dey, R Layer, BJ Reon, JR Gagan, A Dutta
Molecular and cellular biology 35 (3), 498-513, 2015
1312015
Regulation of several androgen-induced genes through the repression of the miR-99a/let-7c/miR-125b-2 miRNA cluster in prostate cancer cells
D Sun, R Layer, AC Mueller, MA Cichewicz, M Negishi, BM Paschal, ...
Oncogene 33 (11), 1448-1457, 2014
1112014
Notch3 and Mef2c proteins are mutually antagonistic via Mkp1 protein and miR-1/206 microRNAs in differentiating myoblasts
J Gagan, BK Dey, R Layer, Z Yan, A Dutta
Journal of Biological Chemistry 287 (48), 40360-40370, 2012
1112012
The structural variation landscape in 492 Atlantic salmon genomes
AC Bertolotti, RM Layer, MK Gundappa, MD Gallagher, E Pehlivanoglu, ...
Nature Communications 11 (1), 5176, 2020
792020
Whole-genome analysis for effective clinical diagnosis and gene discovery in early infantile epileptic encephalopathy
BEP Ostrander, RJ Butterfield, BS Pedersen, AJ Farrell, RM Layer, ...
NPJ genomic medicine 3 (1), 22, 2018
772018
Samplot: a platform for structural variant visual validation and automated filtering
JR Belyeu, M Chowdhury, J Brown, BS Pedersen, MJ Cormier, ...
Genome biology 22 (1), 161, 2021
622021
Efficient genotype compression and analysis of large genetic-variation data sets
RM Layer, N Kindlon, KJ Karczewski, Exome Aggregation Consortium, ...
Nature methods 13 (1), 63-65, 2016
622016
Evaluating the risk of cyber attacks on SCADA systems via Petri net analysis with application to hazardous liquid loading operations
MH Henry, RM Layer, KZ Snow, DR Zaret
2009 IEEE Conference on Technologies for Homeland Security, 607-614, 2009
482009
The system can't perform the operation now. Try again later.
Articles 1–20