| Repair of naturally occurring mismatches can induce mutations in flanking DNA J Chen, BF Miller, AV Furano Elife 3, e02001, 2014 | 105 | 2014 |
| Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data BF Miller, F Huang, L Atta, A Sahoo, J Fan Nature communications 13 (1), 2339, 2022 | 80 | 2022 |
| Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomic data with nonuniform cellular densities BF Miller, D Bambah-Mukku, C Dulac, X Zhuang, J Fan Genome research 31 (10), 1843-1855, 2021 | 79 | 2021 |
| Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression D Huang, HM Petrykowska, BF Miller, L Elnitski, I Ovcharenko Genome research 29 (4), 657-667, 2019 | 60 | 2019 |
| Transient reduction of DNA methylation at the onset of meiosis in male mice V Gaysinskaya, BF Miller, C De Luca, GW Van Der Heijden, KD Hansen, ... Epigenetics & chromatin 11, 1-15, 2018 | 47 | 2018 |
| The emergence of pan-cancer CIMP and its elusive interpretation BF Miller, F Sánchez-Vega, L Elnitski Biomolecules 6 (4), 45, 2016 | 29 | 2016 |
| Structure-based mutagenesis reveals critical residues in the transferrin receptor participating in the mechanism of pH-induced release of iron from human serum transferrin AN Steere, ND Chasteen, BF Miller, VC Smith, RTA MacGillivray, ... Biochemistry 51 (10), 2113-2121, 2012 | 23 | 2012 |
| Ionic residues of human serum transferrin affect binding to the transferrin receptor and iron release AN Steere, BF Miller, SE Roberts, SL Byrne, ND Chasteen, VC Smith, ... Biochemistry 51 (2), 686-694, 2012 | 22 | 2012 |
| Assessing ZNF154 methylation in patient plasma as a multicancer marker in liquid biopsies from colon, liver, ovarian and pancreatic cancer patients BF Miller, HM Petrykowska, L Elnitski Scientific reports 11 (1), 221, 2021 | 21 | 2021 |
| Building genomic analysis pipelines in a hackathon setting with bioinformatician teams: DNA-seq, epigenomics, metagenomics and RNA-seq B Busby, A Dillman, CL Simpson, I Fingerman, S Yun, DM Kristensen, ... BioRxiv, 018085, 2015 | 7 | 2015 |
| Leveraging locus-specific epigenetic heterogeneity to improve the performance of blood-based DNA methylation biomarkers BF Miller, TR Pisanic II, G Margolin, HM Petrykowska, P Athamanolap, ... Clinical epigenetics 12, 1-19, 2020 | 6 | 2020 |
| Single cell and spatial transcriptomics analysis of kidney double negative T lymphocytes in normal and ischemic mouse kidneys S Gharaie, K Lee, K Noller, EK Lo, B Miller, HJ Jung, AM Newman-Rivera, ... Scientific reports 13 (1), 20888, 2023 | 1 | 2023 |
| Characterizing cell-type spatial relationships across length scales in spatially resolved omics data R dos Santos Peixoto, BF Miller, MA Brusko, L Atta, M Anant, MA Atkinson, ... bioRxiv, 2023.10. 05.560733, 2023 | 1 | 2023 |
| Investigation of blood-based biomarkers and patterns of DNA methylation in tumors BF Miller Johns Hopkins University, 2020 | 1 | 2020 |
| Evaluating Stacked Methylation Markers for Blood-Based Multicancer Detection K Funderburk, SR Bang-Christensen, BF Miller, H Tan, G Margolin, ... Cancers 15 (19), 4826, 2023 | | 2023 |
| DREAMing as a simple and low cost alternative for the assessment of methylation in ultra rare DNA TR Pisanic, P Athamanolap, BF Miller, V Wu, L Elnitski, TH Wang Cancer Research 77 (13_Supplement), 4666-4666, 2017 | | 2017 |
