| MMSplice: modular modeling improves the predictions of genetic variant effects on splicing J Cheng, TYD Nguyen, KJ Cygan, MH Çelik, WG Fairbrother, Ž Avsec, ... Genome biology 20, 1-15, 2019 | 160 | 2019 |
| Detection of aberrant splicing events in RNA-seq data using FRASER C Mertes, IF Scheller, VA Yépez, MH Çelik, Y Liang, LS Kremer, M Gusic, ... Nature communications 12 (1), 1-13, 2021 | 98* | 2021 |
| Quantification of proteins and histone marks in Drosophila embryos reveals stoichiometric relationships impacting chromatin regulation J Bonnet, RGH Lindeboom, D Pokrovsky, G Stricker, MH Celik, ... Developmental cell 51 (5), 632-644. e6, 2019 | 55 | 2019 |
| MTSplice predicts effects of genetic variants on tissue-specific splicing J Cheng, MH Çelik, A Kundaje, J Gagneur Genome biology 22, 1-19, 2021 | 35 | 2021 |
| Systematic assessment of long-read RNA-seq methods for transcript identification and quantification FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ... bioRxiv, 2021 | 30 | 2021 |
| Aberrant splicing prediction across human tissues N Wagner, MH Çelik, FR Hölzlwimmer, C Mertes, H Prokisch, VA Yépez, ... Nature Genetics 55 (5), 861-870, 2023 | 20 | 2023 |
| Assessing predictions of the impact of variants on splicing in CAGI5 SM Mount, Ž Avsec, L Carmel, R Casadio, MH Çelik, K Chen, J Cheng, ... Human mutation 40 (9), 1215-1224, 2019 | 18 | 2019 |
| CAGI 5 splicing challenge: improved exon skipping and intron retention predictions with MMSplice J Cheng, MH Çelik, TYD Nguyen, Ž Avsec, J Gagneur Human mutation 40 (9), 1243-1251, 2019 | 13 | 2019 |
| The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity F Reese, B Williams, G Balderrama-Gutierrez, D Wyman, MH Çelik, ... bioRxiv, 2023 | 10 | 2023 |
| A text mining approach to determinants of attitude towards Syrian immigration in the Turkish Twittersphere HZ Koytak, MH Celik Social Science Computer Review 41 (2), 608-625, 2023 | 5 | 2023 |
| Personalized Metabolic Analysis of Diseases A Cakmak, MH Celik IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2020 | 4 | 2020 |
| CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods N Null, S Jain, C Bakolitsa, SE Brenner, P Radivojac, J Moult, S Repo, ... Genome Biology 25 (1), 1-46, 2024 | 2 | 2024 |
| Analysis of alternative polyadenylation from long-read or short-read RNA-seq with LAPA MH Çelik, A Mortazavi bioRxiv, 2022.11. 08.515683, 2022 | 2 | 2022 |
| From Tribal Polarization to Socio-Economic Disparities: Exploring the Landscape of Vaccine Hesitancy on Twitter H Ayaz, MH Celik, HZ Koytak, IE Yanik medRxiv, 2023.07. 24.23293093, 2023 | 1 | 2023 |
| Identifying dysregulated regions in amyotrophic lateral sclerosis through chromatin accessibility outliers MH Celik, J Gagneur, RG Lim, J Wu, LM Thompson, X Xie bioRxiv, 2023.08. 25.554881, 2023 | | 2023 |
Julien GagneurProfessor, TUM, MunichVerified email at in.tum.de
