The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20 (1), 1-23, 2019 | 352 | 2019 |
LocTree3 prediction of localization T Goldberg, M Hecht, T Hamp, T Karl, G Yachdav, N Ahmed, U Altermann, ... Nucleic acids research 42 (W1), W350-W355, 2014 | 318 | 2014 |
TMSEG: Novel prediction of transmembrane helices M Bernhofer, E Kloppmann, J Reeb, B Rost Proteins: Structure, Function, and Bioinformatics 84 (11), 1706-1716, 2016 | 55 | 2016 |
The landscape of GWAS validation; systematic review identifying 309 validated non-coding variants across 130 human diseases AJ Alsheikh, S Wollenhaupt, EA King, J Reeb, S Ghosh, LR Stolzenburg, ... BMC medical genomics 15 (1), 74, 2022 | 37 | 2022 |
Evaluation of transmembrane helix predictions in 2014 J Reeb, E Kloppmann, M Bernhofer, B Rost Proteins: Structure, Function, and Bioinformatics 83 (3), 473-484, 2015 | 35 | 2015 |
Secondary Structure Prediction J Reeb, B Rost Elsevier, 2018 | 33 | 2018 |
Variant effect predictions capture some aspects of deep mutational scanning experiments J Reeb, T Wirth, B Rost BMC bioinformatics 21, 1-12, 2020 | 32 | 2020 |
Common sequence variants affect molecular function more than rare variants? Y Mahlich, J Reeb, M Hecht, M Schelling, TAP De Beer, Y Bromberg, ... Scientific reports 7 (1), 1608, 2017 | 26 | 2017 |
Predicted molecular effects of sequence variants link to system level of disease J Reeb, M Hecht, Y Mahlich, Y Bromberg, B Rost PLoS computational biology 12 (8), e1005047, 2016 | 22 | 2016 |
Predictive methods using protein sequences J Reeb, T Goldberg, Y Ofran, B Rost Bioinformatics 185, 2020 | 4 | 2020 |
ISMB 2014 Proceedings Papers Committee S Batzoglu, R Schwartz, T Lengauer, B Bioimaging, S Kasif, D Heckerman, ... | 1* | |
Machine learning reveals genetic modifiers of the immune microenvironment of cancer B Riley-Gillis, SW Tsaih, E King, S Wollenhaupt, J Reeb, AR Peck, ... Iscience 26 (9), 2023 | | 2023 |
Assessment of variant effect prediction J Reeb Technische Universität München, 2020 | | 2020 |
Protein Secondary Structure Prediction in 2018 E Kloppmann, J Reeb, P Hoenigschmid, B Rost Encyclopedia of Biophysics, 2019 | | 2019 |
Membrane Protein Structure M Punta, E Kloppmann, J Reeb Encyclopedia of Biophysics, 2019 | | 2019 |
Establishment of an interdisciplinary workflow of machine learning-based Radiomics in sarcoma patients JC Peeken, C Knie, V Golkov, K Kessel, F Pasa, Q Khan, M Seroglazov, ... STRAHLENTHERAPIE UND ONKOLOGIE 193, S174-S174, 2017 | | 2017 |
ISMB/ECCB 2009 Proceedings papers committee IG Costa, A Schönhuth, C Hafemeister, A Schliep, Y Huang, S Wuchty, ... Bioinformatics 25 (12), i119-i1127, 2009 | | 2009 |
Supporting online material (SOM) for Y Mahlich, J Reeb, M Hecht, TAP De Beer, Y Bromberg, B Rost | | |