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Giulio Formenti
Giulio Formenti
Verified email at rockefeller.edu
Title
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Cited by
Year
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
17012022
Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
Nature 592 (7856), 737-746, 2021
13202021
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
M Uliano-Silva, JGRN Ferreira, K Krasheninnikova, G Formenti, L Abueg, ...
BMC bioinformatics 24 (1), 288, 2023
4882023
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
2752023
Long walk to genomics: History and current approaches to genome sequencing and assembly
AM Giani, GR Gallo, L Gianfranceschi, G Formenti
Computational and Structural Biotechnology Journal 18, 9-19, 2020
2622020
The earth BioGenome project 2020: Starting the clock
HA Lewin, S Richards, E Lieberman Aiden, ML Allende, JM Archibald, ...
Proceedings of the National Academy of Sciences 119 (4), e2115635118, 2022
1452022
The era of reference genomes in conservation genomics
G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ...
Trends in Ecology & Evolution 37 (3), 197-202, 2022
1422022
Population genomics of the critically endangered kākāpō
N Dussex, T Van Der Valk, HE Morales, CW Wheat, D Díez-del-Molino, ...
Cell Genomics 1 (1), 2021
1192021
Semi-automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
Nature 611 (7936), 519-531, 2022
962022
The complete sequence of a human Y chromosome
A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ...
Nature 621 (7978), 344-354, 2023
902023
Reference genome and demographic history of the most endangered marine mammal, the vaquita
PA Morin, FI Archer, CD Avila, JR Balacco, YV Bukhman, W Chow, ...
Molecular Ecology Resources 21 (4), 1008-1020, 2021
792021
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications
G Formenti, A Rhie, J Balacco, B Haase, J Mountcastle, O Fedrigo, ...
Genome biology 22 (1), 120, 2021
782021
How genomics can help biodiversity conservation
K Theissinger, C Fernandes, G Formenti, I Bista, PR Berg, C Bleidorn, ...
Trends in Genetics, 2023
622023
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
AM Mc Cartney, K Shafin, M Alonge, AV Bzikadze, G Formenti, ...
Nature methods 19 (6), 687-695, 2022
592022
Evolutionary and biomedical insights from a marmoset diploid genome assembly
C Yang, Y Zhou, S Marcus, G Formenti, LA Bergeron, Z Song, X Bi, ...
Nature 594 (7862), 227-233, 2021
412021
Merfin: improved variant filtering and polishing via k-mer validation
G Formenti, A Rhie, BP Walenz, F Thibaud-Nissen, K Shafin, S Koren, ...
BioRxiv, 2021.07. 16.452324, 2021
32*2021
Widespread false gene gains caused by duplication errors in genome assemblies
BJ Ko, C Lee, J Kim, A Rhie, DA Yoo, K Howe, J Wood, S Cho, S Brown, ...
Genome Biology 23 (1), 1-26, 2022
302022
False gene and chromosome losses in genome assemblies caused by GC content variation and repeats
J Kim, C Lee, BJ Ko, DA Yoo, S Won, AM Phillippy, O Fedrigo, G Zhang, ...
Genome Biology 23 (1), 204, 2022
252022
SMRT long reads and Direct Label and Stain optical maps allow the generation of a high-quality genome assembly for the European barn swallow (Hirundo rustica rustica)
G Formenti, M Chiara, L Poveda, KJ Francoijs, A Bonisoli-Alquati, ...
GigaScience 8 (1), giy142, 2018
242018
False gene and chromosome losses affected by assembly and sequence errors
J Kim, C Lee, BJ Ko, DA Yoo, S Won, A Phillippy, O Fedrigo, G Zhang, ...
BioRxiv, 2021.04. 09.438906, 2021
192021
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